[ome-users] May I open mrxs format image

[David Gault (Staff)]

Hi Qi,

Im afraid the 3D Histech Mirax (.mrxs) format is not yet supported in Bio-Formats, further details as to why can be found in a previous blog post: http://blog.openmicroscopy.org/file-formats/community/2016/01/06/format-support/

The lowest resolution you are seeing is due to one of the other readers being able to partially parse the .dat file (https://trello.com/c/emkRPSaE/328-3d-histech-enforce-detection).
Support for this format has been requested before and I have noted your issue on the Trello card on our New File Formats board (https://trello.com/c/0MRuSFky/37-3d-histech-mirax-mrxs).

With Thanks,
David Gault

On 28 May 2019, at 19:13, Qi Gong <qigong at gwmail.gwu.edu<mailto:qigong at gwmail.gwu.edu>> wrote:

Hi everyone,

We use Bioformats to load WSI into matlab.

Our collaborator sent us some WSI. Each WSI was saved in two parts

  1.  One mrxs file about 20kb
  2.  One folder with same name as mrxs file. It contains
     *   One vmsm file
     *   several .dat files
     *   One .ini file

I can use WSI viewers (Qupath, Sedeen) to open the mrxs file and view (zoom in) the WSI.

However, when I use bio-format to load the mrxs file, bio-format only find one layer of WSI with lowest resolution (548 x 1244).

Does anyone have experience about loading mrxs image? How can I get high magnification image? Thank you.

Regards,
Qi

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