[ome-users] May I open mrxs format image

Qi Gong qigong at gwmail.gwu.edu
Tue May 28 19:13:39 BST 2019


Hi everyone,

We use Bioformats to load WSI into matlab.

Our collaborator sent us some WSI. Each WSI was saved in two parts


   1. One mrxs file about 20kb
   2. One folder with same name as mrxs file. It contains
      1. One vmsm file
      2. several .dat files
      3. One .ini file

I can use WSI viewers (Qupath, Sedeen) to open the mrxs file and view (zoom
in) the WSI.

However, when I use bio-format to load the mrxs file, bio-format only find
one layer of WSI with lowest resolution (548 x 1244).

Does anyone have experience about loading mrxs image? How can I get high
magnification image? Thank you.

Regards,
Qi

-- 
mobile phone: 2024060862
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