[ome-users] May I open mrxs format image

[Qi Gong]

Hi David,

Got it. Thank you.

Regards,
Qi

On Wed, May 29, 2019 at 7:03 AM David Gault (Staff) <d.gault at dundee.ac.uk>
wrote:

> Hi Qi,
>
> Im afraid the 3D Histech Mirax (.mrxs) format is not yet supported in
> Bio-Formats, further details as to why can be found in a previous blog
> post:
> http://blog.openmicroscopy.org/file-formats/community/2016/01/06/format-support/
>
>
> The lowest resolution you are seeing is due to one of the other readers
> being able to partially parse the .dat file (
> https://trello.com/c/emkRPSaE/328-3d-histech-enforce-detection).
> Support for this format has been requested before and I have noted your
> issue on the Trello card on our New File Formats board (
> https://trello.com/c/0MRuSFky/37-3d-histech-mirax-mrxs).
>
> With Thanks,
> David Gault
>
> On 28 May 2019, at 19:13, Qi Gong <qigong at gwmail.gwu.edu> wrote:
>
> Hi everyone,
>
> We use Bioformats to load WSI into matlab.
>
> Our collaborator sent us some WSI. Each WSI was saved in two parts
>
>
>    1. One mrxs file about 20kb
>    2. One folder with same name as mrxs file. It contains
>       1. One vmsm file
>       2. several .dat files
>       3. One .ini file
>
> I can use WSI viewers (Qupath, Sedeen) to open the mrxs file and view
> (zoom in) the WSI.
>
> However, when I use bio-format to load the mrxs file, bio-format only find
> one layer of WSI with lowest resolution (548 x 1244).
>
> Does anyone have experience about loading mrxs image? How can I get high
> magnification image? Thank you.
>
> Regards,
> Qi
>
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