[ome-users] Question about extract icc and apply icc file

[David Gault (Staff)]

Hi Qi,

Currently Bio-Formats does not support ICC profiles and as such there is no additional processing of the pixel data.
If you are able to provide a sample file along with a code snippet showing how you are extracting the ROI and the expected outcome, then we may be able to assist you further.

You can upload any sample file to https://www.openmicroscopy.org/qa2/qa/upload/

With Thanks,
David Gault

On 26 Sep 2017, at 14:41, Qi Gong <qigong at gwmail.gwu.edu<mailto:qigong at gwmail.gwu.edu>> wrote:

Hello everyone,

We use Bioformat to extract ROI from WSI. But the color of extracted
ROI is different from imagescope displayed ROI. We think that might be
the icc problem.

The image formats we are using are ndpi and svs. We think the icc in
embed in the image file. We want to know
1. Does Bioformat automatically apply the icc to the image?
2. Is there any Bioformat function we can use to get the embed icc
file or information?

Thank you,
Qi

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