[ome-users] Support for 3D Histech digital slides (.mrxs format)

[Ofra Golani]

Hi,

Is it possible to extend Bio-formats to support digital slides acquired using 3D Histech digital scanner.
The files are of .mrxs format which accompanies by a folder of many .dat files.
We will be happy to provide sample data if needed.

We now use Panoramic Viewer to export each slide independently into tiled tif file, because Panoramic Viewer export cannot be batched.
As we need to run image analysis on many slides in ImageJ the export step is very time-consuming and we want to avoid it.

Best Regrads,
Ofra Golani

BioImaging Analyst
Biological Services Department
Weizmann Institute of Science
Tel: +972-8-934-5177
ofra.golani at weizmann.ac.il
http://wws.weizmann.ac.il/Biological_Services/bioinformatics-about
http://wws.weizmann.ac.il/vet/IC/content/bulletin-board

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