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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Is it possible to extend Bio-formats to support digital slides acquired using 3D Histech digital scanner.
<o:p></o:p></p>
<p class="MsoNormal">The files are of .mrxs format which accompanies by a folder of many .dat files.
<o:p></o:p></p>
<p class="MsoNormal">We will be happy to provide sample data if needed.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">We now use Panoramic Viewer to export each slide independently into tiled tif file, because Panoramic Viewer export cannot be batched.<o:p></o:p></p>
<p class="MsoNormal">As we need to run image analysis on many slides in ImageJ the export step is very time-consuming and we want to avoid it.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best Regrads,<o:p></o:p></p>
<p class="MsoNormal">Ofra Golani<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">BioImaging Analyst<o:p></o:p></p>
<p class="MsoNormal">Biological Services Department<o:p></o:p></p>
<p class="MsoNormal">Weizmann Institute of Science<o:p></o:p></p>
<p class="MsoNormal">Tel: +972-8-934-5177<o:p></o:p></p>
<p class="MsoNormal">ofra.golani@weizmann.ac.il<o:p></o:p></p>
<p class="MsoNormal"><a href="http://wws.weizmann.ac.il/Biological_Services/bioinformatics-about">http://wws.weizmann.ac.il/Biological_Services/bioinformatics-about</a><o:p></o:p></p>
<p class="MsoNormal"><a href="http://wws.weizmann.ac.il/vet/IC/content/bulletin-board">http://wws.weizmann.ac.il/vet/IC/content/bulletin-board</a>
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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