[ome-users] Unable to open lif file

[Mai Tran]

Hi Roger,

I've tried to disable SCIFIO and when open the lif file I got this (I think
it's the same error). I forgot to mention before, I've tried on both Mac
and PC Fiji

java.lang.NumberFormatException: empty String
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:992)
at java.lang.Double.valueOf(Double.java:475)
at java.lang.Double.<init>(Double.java:567)
at loci.formats.in.LIFReader.translateFilterSettings(LIFReader.java:1495)
at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1006)
at loci.formats.in.LIFReader.initMetadata(LIFReader.java:511)
at loci.formats.in.LIFReader.initFile(LIFReader.java:453)
at loci.formats.FormatReader.setId(FormatReader.java:1317)
        ...
I've uploaded file to the link provided. Please let me know if that did not
get uploaded properly.

Thank you for your help

mai

On Fri, Apr 10, 2015 at 3:40 AM, Roger Leigh <rleigh at dundee.ac.uk> wrote:

> On 09/04/15 22:41, Mai Tran wrote:
>
>> Dear,
>>
>> I cannot open some of my lif files and have no idea why that is. One of my
>> file opened fine but I don't know what was different about that one. Below
>> is the error message that I got. I've tried to update to the new bioformat
>> but that makes no difference.
>>
>
> There are two possibilities for what's causing the problem
>
> - use of scifio
> - a LIF reader bug
> (or a combination of the two)
>
> For the first, could you try disabling scifio and then restart and retry
> opening the file with the Bio-Formats importer?
>
> For the second, if you could upload a copy of the file using
>   http://qa.openmicroscopy.org.uk/qa/upload/
> then we can take a look at it and see if there is a reader bug which
> needs fixing.
>
>
> Kind regards,
> Roger
>
> --
> Dr Roger Leigh -- Open Microscopy Environment
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
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>
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