[ome-users] Unable to open lif file

[Mai Tran]

Link to file uploaded:

https://www.openmicroscopy.org/qa2/qa/feedback/10983/?token=973a443350f266c4564d3a3cbd3f6af4

mai

On Fri, Apr 10, 2015 at 9:53 AM, Mai Tran <maimisa8 at gmail.com> wrote:

> Hi Roger,
>
> I've tried to disable SCIFIO and when open the lif file I got this (I
> think it's the same error). I forgot to mention before, I've tried on both
> Mac and PC Fiji
>
> java.lang.NumberFormatException: empty String
> at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:992)
> at java.lang.Double.valueOf(Double.java:475)
> at java.lang.Double.<init>(Double.java:567)
> at loci.formats.in.LIFReader.translateFilterSettings(LIFReader.java:1495)
> at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1006)
> at loci.formats.in.LIFReader.initMetadata(LIFReader.java:511)
> at loci.formats.in.LIFReader.initFile(LIFReader.java:453)
> at loci.formats.FormatReader.setId(FormatReader.java:1317)
>         ...
> I've uploaded file to the link provided. Please let me know if that did
> not get uploaded properly.
>
> Thank you for your help
>
> mai
>
> On Fri, Apr 10, 2015 at 3:40 AM, Roger Leigh <rleigh at dundee.ac.uk> wrote:
>
>> On 09/04/15 22:41, Mai Tran wrote:
>>
>>> Dear,
>>>
>>> I cannot open some of my lif files and have no idea why that is. One of
>>> my
>>> file opened fine but I don't know what was different about that one.
>>> Below
>>> is the error message that I got. I've tried to update to the new
>>> bioformat
>>> but that makes no difference.
>>>
>>
>> There are two possibilities for what's causing the problem
>>
>> - use of scifio
>> - a LIF reader bug
>> (or a combination of the two)
>>
>> For the first, could you try disabling scifio and then restart and retry
>> opening the file with the Bio-Formats importer?
>>
>> For the second, if you could upload a copy of the file using
>>   http://qa.openmicroscopy.org.uk/qa/upload/
>> then we can take a look at it and see if there is a reader bug which
>> needs fixing.
>>
>>
>> Kind regards,
>> Roger
>>
>> --
>> Dr Roger Leigh -- Open Microscopy Environment
>> Wellcome Trust Centre for Gene Regulation and Expression,
>> College of Life Sciences, University of Dundee, Dow Street,
>> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>>
>> The University of Dundee is a registered Scottish Charity, No: SC015096
>> _______________________________________________
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>> ome-users at lists.openmicroscopy.org.uk
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>>
>
>
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