[ome-users] Fwd: problem opening .ims files

[Curtis Rueden]

Hi Sharmon,

> > I tried to download the update for Bio-Formats to troubleshoot a
> > problem i was having opening .ims files.
>
> Copy this jar file into the ImageJ plugins folder, and make sure that
> any existing loci_tools.jar in this folder is removed.  You will be
> using the new version the next time you restart ImageJ.

Or use the Fiji distribution of ImageJ (http://fiji.sc/). It will do the
updates automatically for you, saving much pain.

Regards,
Curtis


On Thu, Feb 13, 2014 at 6:42 AM, Roger Leigh <rleigh at dundee.ac.uk> wrote:

> On 12/02/14 13:08, Roger Leigh wrote:
>
>> On 11/02/14 20:21, Josh Moore wrote:
>>
>>> Forwarding to the list.
>>> ~J.
>>>
>>>
>  This is the exception error I receive when trying to open the .ims files
>>>>
>>>> ImageJ 1.47v; Java 1.6.0_65 [64-bit]; Mac OS X 10.6.8; 21MB of 658MB
>>>> (3%)
>>>>
>>>> java.lang.NumberFormatException: For input string: "0.000"
>>>>
>>>
>> Please could you upload a copy of this image so we can take a look at
>> what's causing the error in more detail?  You can do so here:
>>
>> http://qa.openmicroscopy.org.uk/qa/upload/
>>
>
> Thanks for uploading the image.  I have tested opening this with
> versions 4.4.10, 5.0.0-rc1 and the latest development code; it works
> fine with all three from what I can see.  I certainly don't get the
> error above.
>
> I would suggest updating by downloading the bioformats package from
> here: http://downloads.openmicroscopy.org/bio-formats/5.0.0-rc2/
>
> http://downloads.openmicroscopy.org/bio-formats/5.0.0-rc2/artifacts/
> bioformats_package.jar
>
> Copy this jar file into the ImageJ plugins folder, and make sure that
> any existing loci_tools.jar in this folder is removed.  You will be
> using the new version the next time you restart ImageJ.
>
>
> Regards,
> Roger
>
>
> --
> Dr Roger Leigh -- Open Microscopy Environment
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
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>
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