[ome-users] Importing a file sequence into OMERO

[William Moore]

Hi Niko,

 You can assemble single plane tiffs into a multi-dimensional image using the "Combine Images" script. See http://help.openmicroscopy.org/utility-scripts.html

Once you've combined the images (and you're happy with it, you can delete the single plane images to save space).

 Hope that works for you,

  Will.



On 8 Aug 2014, at 17:20, Niko Ehrenfeuchter <nikolaus.ehrenfeuchter at unibas.ch> wrote:

> Dear all,
> 
> we're having a group here that has quite some stacks that were saved as separate TIFFs, one file per z-slice and per channel, following a naming scheme like this:
> 
>> username.txt
>> username_z0000_w0000.tif
>> username_z0000_w0001.tif
>> username_z0001_w0000.tif
>> username_z0001_w0001.tif
>> username_z0002_w0000.tif
>> username_z0002_w0001.tif
> [...]
>> username_z0012_w0000.tif
>> username_z0012_w0001.tif
>> username_z0013_w0000.tif
>> username_z0013_w0001.tif
> 
> Is it possible to import them into OMERO so they're recognized / assembled as stacks instead of (Z x C) separate images?
> 
> Cheers
> ~Niko
> 
> -- 
> Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
> Phone: +41 (61) 26 72673 | nikolaus.ehrenfeuchter at unibas.ch | www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch
> _______________________________________________
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