[ome-users] Importing a file sequence into OMERO

[Niko Ehrenfeuchter]

Thanks Will, we'll try that!

Cheers
~Niko

On 08.08.2014 22:55, William Moore wrote:
> Hi Niko,
>
>   You can assemble single plane tiffs into a multi-dimensional image
> using the "Combine Images" script. See
> http://help.openmicroscopy.org/utility-scripts.html
>
> Once you've combined the images (and you're happy with it, you can
> delete the single plane images to save space).
>
>   Hope that works for you,
>
>    Will.
>
>
>
> On 8 Aug 2014, at 17:20, Niko Ehrenfeuchter
> <nikolaus.ehrenfeuchter at unibas.ch
> <mailto:nikolaus.ehrenfeuchter at unibas.ch>> wrote:
>
>> Dear all,
>>
>> we're having a group here that has quite some stacks that were saved
>> as separate TIFFs, one file per z-slice and per channel, following a
>> naming scheme like this:
>>
>>> username.txt
>>> username_z0000_w0000.tif
>>> username_z0000_w0001.tif
>>> username_z0001_w0000.tif
>>> username_z0001_w0001.tif
>>> username_z0002_w0000.tif
>>> username_z0002_w0001.tif
>> [...]
>>> username_z0012_w0000.tif
>>> username_z0012_w0001.tif
>>> username_z0013_w0000.tif
>>> username_z0013_w0001.tif
>>
>> Is it possible to import them into OMERO so they're recognized /
>> assembled as stacks instead of (Z x C) separate images?
>>
>> Cheers
>> ~Niko
>>
>> --
>> Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum,
>> University of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
>> Phone: +41 (61) 26 72673 | nikolaus.ehrenfeuchter at unibas.ch
>> <mailto:nikolaus.ehrenfeuchter at unibas.ch> | www.biozentrum.unibas.ch
>> <http://www.biozentrum.unibas.ch> | www.microscopynetwork.unibas.ch
>> <http://www.microscopynetwork.unibas.ch>
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>


-- 
Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University 
of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
Phone: +41 (61) 26 72673 | nikolaus.ehrenfeuchter at unibas.ch | 
www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch