<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Niko,<div><br></div><div> You can assemble single plane tiffs into a multi-dimensional image using the "Combine Images" script. See <a href="http://help.openmicroscopy.org/utility-scripts.html">http://help.openmicroscopy.org/utility-scripts.html</a></div><div><br></div><div>Once you've combined the images (and you're happy with it, you can delete the single plane images to save space).</div><div><br></div><div> Hope that works for you,</div><div><br></div><div> Will.</div><div><br></div><div><br></div><div><br><div><div>On 8 Aug 2014, at 17:20, Niko Ehrenfeuchter <<a href="mailto:nikolaus.ehrenfeuchter@unibas.ch">nikolaus.ehrenfeuchter@unibas.ch</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Dear all,<br><br>we're having a group here that has quite some stacks that were saved as separate TIFFs, one file per z-slice and per channel, following a naming scheme like this:<br><br><blockquote type="cite">username.txt<br>username_z0000_w0000.tif<br>username_z0000_w0001.tif<br>username_z0001_w0000.tif<br>username_z0001_w0001.tif<br>username_z0002_w0000.tif<br>username_z0002_w0001.tif<br></blockquote>[...]<br><blockquote type="cite">username_z0012_w0000.tif<br>username_z0012_w0001.tif<br>username_z0013_w0000.tif<br>username_z0013_w0001.tif<br></blockquote><br>Is it possible to import them into OMERO so they're recognized / assembled as stacks instead of (Z x C) separate images?<br><br>Cheers<br>~Niko<br><br>-- <br>Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University of Basel | Klingelbergstr. 50/70 | CH-4056 Basel<br>Phone: +41 (61) 26 72673 | <a href="mailto:nikolaus.ehrenfeuchter@unibas.ch">nikolaus.ehrenfeuchter@unibas.ch</a> | <a href="http://www.biozentrum.unibas.ch">www.biozentrum.unibas.ch</a> | <a href="http://www.microscopynetwork.unibas.ch">www.microscopynetwork.unibas.ch</a><br>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br></blockquote></div><br></div></body></html>