[ome-users] Splitting .lif files

[Curtis Rueden]

Hi Greg,

> I didn’t cc the list on this message since I’m not sure what I am
> doing.

Who does, really?

Seriously, CCing the list is more so that we can all work together as
needed to troubleshoot your problem. If you write me a private mail and I
am on vacation or too busy, you won't get an answer, whereas if you write
to the list we try to always have someone answer within 24-48 hours.

> I had checked the install and it looked like the most current update
> of BioFormats was not opening the files correctly.

When you say "most current update" do you mean with or without the
"Bio-Formats daily builds" turned on (please see
http://fiji.sc/Bio-Formats#Daily_builds)?

> I would love to help you guys fix this – the problem is that the file
> size that doesn’t work is rather large (at least 50 GB)

Well, in this case sending us a file may not actually help anything. The
key is to figure out the difference between your two machines.

Please run Help > About Plugins > LOCI Plugins... on both computers. Take
note of the revision code, e.g. "093d067", and the build date immediately
afterward. Probably they do not match. Can you please reply back with those
codes? They will tell us exactly which source code you are using on each
computer.

Thanks,
Curtis


On Tue, Sep 10, 2013 at 12:17 PM, Greg Lampard <glampard at stanford.edu>wrote:

> Hi Curtis – I didn’t cc the list on this message since I’m not sure what I
> am doing.  I had checked the install and it looked like the most current
> update of BioFormats was not opening the files correctly.  I would love to
> help you guys fix this – the problem is that the file size that doesn’t
> work is rather large (at least 50 GB) so I am not sure how to help.****
>
> ** **
>
> Greg****
>
> ** **
>
> ** **
>
> *From:* ctrueden.wisc at gmail.com [mailto:ctrueden.wisc at gmail.com] *On
> Behalf Of *Curtis Rueden
> *Sent:* Monday, September 09, 2013 4:57 PM
> *To:* Greg Lampard; OME-users mailing list
> *Subject:* RE: [ome-users] Splitting .lif files****
>
> ** **
>
> Hi Greg,****
>
> Please keep the list CCed to keep other Bio-Formats developers in the loop.
> ****
>
> Did you try enabling the "Bio-Formats daily builds" update site (see
> bottom of http://fiji.sc/Bio-Formats for instructions how)? The bug may
> be fixed already, and if not wr would like to know more details do we can
> fix it.****
>
> Thanks,
> Curtis****
>
> On Sep 9, 2013 6:18 PM, "Greg Lampard" <glampard at stanford.edu> wrote:****
>
> I actually downgraded to an older version to get it to work.  The newest
> update doesn’t work properly****
>
>  ****
>
>  ****
>
> *From:* ctrueden.wisc at gmail.com [mailto:ctrueden.wisc at gmail.com] *On
> Behalf Of *Curtis Rueden
> *Sent:* Monday, September 09, 2013 3:50 PM
> *To:* Greg Lampard
> *Cc:* OME-users mailing list
> *Subject:* Re: [ome-users] Splitting .lif files****
>
>  ****
>
> Hi Greg,****
>
> Are both Fijis fully updated (Help > Update Fiji)?****
>
> What does Help > About Plugins > LOCI Plugins say for the build date and
> commit hash? Do they match?****
>
> Regards,
> Curtis****
>
> On Sep 9, 2013 5:11 PM, "Greg Lampard" <glampard at stanford.edu> wrote:****
>
> I am working with .lif files.  On one version of Fiji the files open
> fine.  On two other computers the tilescans are split into groups.  I do
> not understand why.  From what I can tell with the options, they are the
> same – open using virtual stack, and hyperstacks.  No other boxes are
> checked.  Has anybody encountered this?****
>
>  ****
>
>  ****
>
>  ****
>
> Greg Lampard PhD****
>
>  ****
>
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users****
>
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