<div dir="ltr">Hi Greg,<div><div><br></div><div><div>> I didn’t cc the list on this message since I’m not sure what I am</div><div>> doing.</div></div><div><br></div><div>Who does, really?</div><div><br></div><div>Seriously, CCing the list is more so that we can all work together as needed to troubleshoot your problem. If you write me a private mail and I am on vacation or too busy, you won't get an answer, whereas if you write to the list we try to always have someone answer within 24-48 hours.</div>
<div><br></div><div>> I had checked the install and it looked like the most current update</div><div>> of BioFormats was not opening the files correctly.</div></div><div><br></div><div><span style="font-family:arial,sans-serif;font-size:13px">When you say "most current update" do you mean with or without the "Bio-Formats daily builds" turned on (please see </span><font face="arial, sans-serif"><a href="http://fiji.sc/Bio-Formats#Daily_builds">http://fiji.sc/Bio-Formats#Daily_builds</a>)?</font></div>
<div><div><br></div><div>> I would love to help you guys fix this – the problem is that the file</div><div>> size that doesn’t work is rather large (at least 50 GB)</div></div><div><br></div><div><span style="font-family:arial,sans-serif;font-size:13px">Well, in this case sending us a file may not actually help anything. The key is to figure out the difference between your two machines.</span></div>
<div><span style="font-family:arial,sans-serif;font-size:13px"><br></span></div><div><span style="font-family:arial,sans-serif;font-size:13px">Please run Help > About Plugins > LOCI Plugins... on both computers. Take note of the revision code, e.g. "093d067", and the build date immediately afterward. Probably they do not match. Can you please reply back with those codes? They will tell us exactly which source code you are using on each computer.</span></div>
<div><span style="font-family:arial,sans-serif;font-size:13px"><br></span></div><div><span style="font-family:arial,sans-serif;font-size:13px">Thanks,</span></div><div><span style="font-family:arial,sans-serif;font-size:13px">Curtis</span></div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Sep 10, 2013 at 12:17 PM, Greg Lampard <span dir="ltr"><<a href="mailto:glampard@stanford.edu" target="_blank">glampard@stanford.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div lang="EN-US" link="blue" vlink="purple"><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Hi Curtis – I didn’t cc the list on this message since I’m not sure what I am doing. I had checked the install and it looked like the most current update of BioFormats was not opening the files correctly. I would love to help you guys fix this – the problem is that the file size that doesn’t work is rather large (at least 50 GB) so I am not sure how to help.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Greg<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0in 0in 0in"><p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a> [mailto:<a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a>] <b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Monday, September 09, 2013 4:57 PM<br><b>To:</b> Greg Lampard; OME-users mailing list<br><b>Subject:</b> RE: [ome-users] Splitting .lif files<u></u><u></u></span></p></div><div class="im"><p class="MsoNormal">
<u></u> <u></u></p><p>Hi Greg,<u></u><u></u></p><p>Please keep the list CCed to keep other Bio-Formats developers in the loop.<u></u><u></u></p><p>Did you try enabling the "Bio-Formats daily builds" update site (see bottom of <a href="http://fiji.sc/Bio-Formats" target="_blank">http://fiji.sc/Bio-Formats</a> for instructions how)? The bug may be fixed already, and if not wr would like to know more details do we can fix it.<u></u><u></u></p>
<p>Thanks,<br>Curtis<u></u><u></u></p><div><p class="MsoNormal">On Sep 9, 2013 6:18 PM, "Greg Lampard" <<a href="mailto:glampard@stanford.edu" target="_blank">glampard@stanford.edu</a>> wrote:<u></u><u></u></p>
<div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I actually downgraded to an older version to get it to work. The newest update doesn’t work properly</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> </span><u></u><u></u></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0in 0in 0in"><p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a> [mailto:<a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a>] <b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Monday, September 09, 2013 3:50 PM<br><b>To:</b> Greg Lampard<br><b>Cc:</b> OME-users mailing list<br><b>Subject:</b> Re: [ome-users] Splitting .lif files</span><u></u><u></u></p></div><p class="MsoNormal"> <u></u><u></u></p>
<p>Hi Greg,<u></u><u></u></p><p>Are both Fijis fully updated (Help > Update Fiji)?<u></u><u></u></p><p>What does Help > About Plugins > LOCI Plugins say for the build date and commit hash? Do they match?<u></u><u></u></p>
<p>Regards,<br>Curtis<u></u><u></u></p><div><p class="MsoNormal">On Sep 9, 2013 5:11 PM, "Greg Lampard" <<a href="mailto:glampard@stanford.edu" target="_blank">glampard@stanford.edu</a>> wrote:<u></u><u></u></p>
<div><div><p class="MsoNormal">I am working with .lif files. On one version of Fiji the files open fine. On two other computers the tilescans are split into groups. I do not understand why. From what I can tell with the options, they are the same – open using virtual stack, and hyperstacks. No other boxes are checked. Has anybody encountered this?<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p><p class="MsoNormal"> <u></u><u></u></p><p class="MsoNormal"> <u></u><u></u></p><p class="MsoNormal">Greg Lampard PhD<u></u><u></u></p><p class="MsoNormal"> <u></u><u></u></p></div>
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