[ome-users] [Software Feedback] LOCI plugin bug

[Curtis Rueden]

Hi Daniel,

> I have not heard from you in a while. Just to let you know the update
> did not work and still when I try to export an ics stack and separate
> the stack into different files each one a separate time point, the
> first time point is correct and then the following ones always have
> n+1 frames instead of have just the single time point.

Sorry for the delay in reply. I do not know the status of your problem, so
am forwarding your message back to the ome-users list, so someone else can
comment.

Regards,
Curtis


On Wed, Mar 6, 2013 at 3:35 AM, Daniel Martins <
daniel.martins at oncology.ox.ac.uk> wrote:

>  Dear Curtis,
>
> I have not heard from you in a while. Just to let you know the update did
> not work and still when I try to export an ics stack and separate the stack
> into different files each one a separate time point, the first time point
> is correct and then the following ones always have n+1 frames instead of
> have just the single time point.
>
>
> Best,
>
>  Daniel Martins
> DPhil Student
> Gray Institute for Radiation Oncology & Biology
> Department of Oncology
> University of Oxford
> Old Road Campus Research Building, Off Roosevelt Drive
> Oxford, OX3 7DQ
> Phone: +441865 617377
>  Email: daniel.martins at oncology.ox.ac.uk
>   ------------------------------
> *From:* ctrueden.wisc at gmail.com [ctrueden.wisc at gmail.com] on behalf of
> Curtis Rueden [ctrueden at wisc.edu]
> *Sent:* Tuesday, February 19, 2013 7:39 PM
> *To:* Daniel Martins
> *Cc:* OME-users mailing list
> *Subject:* Re: [Software Feedback] LOCI plugin bug
>
>   Hi Daniel,
>
>  > When you export a time series let's assume with 5 time points, the
> > first time point is exported correctly, but then the following ones
> > have an issue.
>
>  Please update your Fiji to the latest version (Help > Update Fiji) and
> try again. If the problem still occurs, let us know. In that case though,
> we may need a test file or macro; you can upload one using the Help >
> Upload Sample Image command if needed.
>
>  Regards,
> Curtis
>
>
> On Tue, Feb 12, 2013 at 10:14 AM, <daniel.martins at oncology.ox.ac.uk>wrote:
>
>> Dear all, I have been using your LOCI plugin to export some ics/ids
>> time-series stacks using FIJI. I have noticed there is a bug on this
>> feature. When you export a time series let's assume with 5 time points, the
>> first time point is exported correctly, but then the following ones have an
>> issue. For example time-point 3 instead of being exported as a single
>> frame, is exported as an ics stack with 3 frames, 2 empty frames and the
>> last one is the actual single frame you would want to be exported to begin
>> with. In summary, each time-point is exported as a stack with a number of
>> frames equal to the time point number. This bug only seems to occur for ics
>> files. If you could help me and look into this it would be greatly
>> appreciated.
>>
>> All the  best,
>>
>> Daniel Martins
>>
>
>
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