[ome-users] ZeissZVIReader help

Curtis Rueden ctrueden at wisc.edu
Fri Feb 22 19:18:54 GMT 2013


Hi Peter,

I briefly investigated using Bio-Formats with IKVM.NET in 2007, but
concluded that it was too slow for our needs at the time. Even then though,
it ostensibly worked, which is pretty impressive for a project of that
scope. And of course, six years later now, I have heard that IKVM.NET is
much improved. You would obviously have to try for yourself, but I am
guessing for your needs it might be a good match.

As for learning Java, fortunately, C# and Java are extremely similar
languages. So hopefully you will not find it too difficult to study the
code examples and adapt them for use in your .NET application.

If you get something working, we would love to hear back about it! We could
post more specific information about .NET & Bio-Formats to the web site for
the benefit of others, if you have any tips, pitfalls, etc., that you want
to share.

Thanks,
Curtis


On Fri, Feb 22, 2013 at 12:04 PM, Melissa Linkert <
melissa at glencoesoftware.com> wrote:

> Hi Peter,
>
> (CC'ing the ome-users mailing list, as that is the best place to ask
> Bio-Formats questions.)
>
> > I am a .NET programmer at UC Davis.  I have a client with 3000+ zvi
> images with associated metadata in the author, comment and keywords fields.
>  I am looking for a method to process these files and extract the zvi image
> and thumbnail and display them, as well as extracting the needed metadata.
> >
> > I am not familiar with java, but I can learn.  IKVM.NET provides a
> framework that enables Java and .NET interoperability (http://www.ikvm.net
> ).
> >
> > I'm wondering if you could share any code that does this or provide me
> any references.
>
> If you haven't already, I would suggest reading this section of the
> Bio-Formats documentation:
>
>
> https://www.openmicroscopy.org/site/support/bio-formats/developers/non-java-code.html
>
> I don't have any direct experience with IKVM, unfortunately, but
> hopefully that gives you a place to start.
>
> Regards,
> -Melissa
>
> On Fri, Feb 22, 2013 at 05:33:17AM +0000, Peter J Hunter wrote:
> > Melissa,
> > I am a .NET programmer at UC Davis.  I have a client with 3000+ zvi
> images with associated metadata in the author, comment and keywords fields.
>  I am looking for a method to process these files and extract the zvi image
> and thumbnail and display them, as well as extracting the needed metadata.
> >
> > I am not familiar with java, but I can learn.  IKVM.NET provides a
> framework that enables Java and .NET interoperability (http://www.ikvm.net
> ).
> >
> > I'm wondering if you could share any code that does this or provide me
> any references.
> > Thanks!
> >
> > Peter J. Hunter
> >
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
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