[ome-users] ome-users Digest, Vol 86, Issue 4

[Chloe van Oostende]

Hi,
I can open the file with the daily version of Bio-Formats.
Thanks!
chloe

2012/5/7 <ome-users-request at lists.openmicroscopy.org.uk>

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>   1. ND2 file from Nikon NIS element4 (Chloe van Oostende)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 7 May 2012 09:44:11 -0400
> From: Chloe van Oostende <chloevanoostende at gmail.com>
> To: ome-users at lists.openmicroscopy.org.uk
> Subject: [ome-users] ND2 file from Nikon NIS element4
> Message-ID:
>        <CAHsjUmqoK53FEMX2RrHtEo=n-gcc-uMy31yrm4qjLuMoBgrOFQ at mail.gmail.com
> >
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
> I have a MAC running with Mac OS 10.6.8. I use ImageJ 1.46m to open all my
> files. Until last week, we had a Nikon microscope, with NIS element3. I
> could open the files with Bio-Formats, wich was really  really great. I
> used the stable version and the trunk build version. We updated our NIS
> element, and all the acquisition made with NIS element4 cannot be opened
> with Bio-formats. The export mode of NIS element viewer for mac, is
> horrible since it save each picture individually...and I have 4D
> acquisition with differents xy points...I cannot work with the viewer it
> will putt a mess in my computer!
> Here is the message I have while trying to open and ND2 file from NIS
> element4:
>
> *java.lang.IndexOutOfBoundsException: Index: 0, Size: 0*
>
> *            at java.util.ArrayList.RangeCheck(ArrayList.java:547)*
>
> *            at java.util.ArrayList.get(ArrayList.java:322)*
>
> *            at
> loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:587)*
>
> *            at loci.formats.FormatReader.setId(FormatReader.java:1091)*
>
> *            at loci.formats.DelegateReader.setId(DelegateReader.java:232)*
>
> *            at
> loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:480)*
>
> *            at
> loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)*
>
> *            at loci.plugins.in.Importer.showDialogs(Importer.java:139)*
>
> *            at loci.plugins.in.Importer.run(Importer.java:77)*
>
> *            at loci.plugins.LociImporter.run(LociImporter.java:79)*
>
> *            at ij.IJ.runUserPlugIn(IJ.java:184)*
>
> *            at ij.IJ.runPlugIn(IJ.java:151)*
>
> *            at ij.Executer.runCommand(Executer.java:127)*
>
> *            at ij.Executer.run(Executer.java:64)*
>
> *            at java.lang.Thread.run(Thread.java:680)*
>
> Please find in attached file, an acquisition I have from NIS element4.
> Hope you will be able to update Bio-Formats, for the pleasure of all ImageJ
> users!
> Thanks!
> Best regards,
>
> Chlo?
>
> --
> *Chlo? van Oostende*
> *PhD molecular and plant cell biology*
>
> Department of Biology
> Concordia University
> 7141 Sherbrooke Street West
> SP-553.05
> Montreal, Quebec
> *Canada H4B 1R6**
> *
> *Lab: (514) 848-2424 ext.5983*
> *
> *
> *http://www.chloevanoostende.net*
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> End of ome-users Digest, Vol 86, Issue 4
> ****************************************
>



-- 
*Chloë van Oostende*
*PhD molecular and plant cell biology*

Department of Biology
Concordia University
7141 Sherbrooke Street West
SP-553.05
Montreal, Quebec
*Canada H4B 1R6**
*
*Lab: (514) 848-2424 ext.5983*
*
*
*http://www.chloevanoostende.net*
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