[ome-devel] IDR screen in Zegami

[Eleanor Williams]

Hi Roger

The zegami demo looks good. I like the left hand filtering panel. I'll be stripping the phenotype number from the map annotations in the IDR demo, but they will still be in the annotation.csv files.  Are you planning on trying to combine data from more than one screen?  If there is anything you'd particularly like changed/added let me know.

Best regards

Eleanor



On 22/06/2016 22:11, Roger Noble wrote:
Hi All,
I’ve just put together a Zegami collection based on the idr0002-heriche-condensation screen.

You can have a look at it here <http://demo.zegami.com/omero-idr.html> http://demo.zegami.com/omero-idr.html

I’ve also integrated the OMERO viewer to allow access to the time points and channels. This can be accessed by clicking an image and selecting the “OMERO Viewer” button on the upper right.

To generate the collection I created a few Python scripts which called the JSON api endpoints made available at http://idr-demo.openmicroscopy.org. I’m in the process of creating a GitHub repository to host the scripts if anyone is interested. I’ll share once it’s ready.

What do you think?

Thanks
Roger Noble
CTO
http://www.zegami.com




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--
Eleanor Williams PhD

Data Annotator/Software Engineer
Centre for Gene Regulation and Expression
University of Dundee, UK

The University of Dundee is a registered Scottish Charity, No: SC015096
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