[ome-devel] IDR screen in Zegami

[Roger Noble]

As promised here are the scripts I used to download the screen metadata and images.

https://github.com/zegami/omero-idr-fetch

Once I had the tab delimited flat files and images I could then import it into Zegami. It requires a few steps, but the simplicity of the output means it can be imported into any application, not just Zegami.

Thanks
Roger Noble
CTO
http://www.zegami.com



From: ome-devel [mailto:ome-devel-bounces at lists.openmicroscopy.org.uk] On Behalf Of Roger Noble
Sent: Wednesday, 22 June 2016 10:12 PM
To: ome-devel at lists.openmicroscopy.org.uk
Subject: [ome-devel] IDR screen in Zegami

Hi All,
I've just put together a Zegami collection based on the idr0002-heriche-condensation screen.

You can have a look at it here http://demo.zegami.com/omero-idr.html

I've also integrated the OMERO viewer to allow access to the time points and channels. This can be accessed by clicking an image and selecting the "OMERO Viewer" button on the upper right.

To generate the collection I created a few Python scripts which called the JSON api endpoints made available at http://idr-demo.openmicroscopy.org. I'm in the process of creating a GitHub repository to host the scripts if anyone is interested. I'll share once it's ready.

What do you think?

Thanks
Roger Noble
CTO
http://www.zegami.com

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