[ome-users] Return Image Type via Bioformats / Fiji

[David Gault (Staff)]

Hi Stephen,

At the top of the 'Show Info' dialog you should have additional metadata which will have a value ‘isRGB’ which will either be true or false.

With Thanks,
David Gault

> On 7 Mar 2019, at 14:37, Stephen Taylor <stephen.taylor at imm.ox.ac.uk> wrote:
>
> Hi,
>
> Is it possible to get the type of image using Bioformats via Fiji?
>
> For example I see you can get some info from https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/basicMetadata.txt
>
> But I want whether the image is RGB or not. So if I run("Show Info...") in Fiji I can get "Bits per pixel" from the output below. Is there is a quick method I can use to get this value?
>
> (Fiji Is Just) ImageJ 2.0.0-rc-69/1.52i; Java 1.8.0_172 [64-bit]; Windows 10 10.0; 128MB of 12098MB (1%)
>
> Title: nucleus_RGB.nii
> Width:  20.9920 µm (512)
> Height:  20.9920 µm (512)
> Depth:  7.125 µm (57)
> Size:  57MB
> Resolution:  24.3902 pixels per µm
> Voxel size: 0.0410x0.0410x0.125 µm^3
> ID: -5
> Bits per pixel: 32 (RGB)
> Image: 26/57
> No threshold
> ScaleToFit: false
> Uncalibrated
> Path: C:\Users\cbrgsteve\Documents\Babel\Nii\nucleus_RGB.nii
> Screen location: 1063,267 (1920x1200)
> Coordinate origin:  0,0,0
> No overlay
> No selection
>
>
> Kind regards and thanks,
>
> Steve
> ----------------------------------
> Co-Leader MRC WIMM Centre of Computational Biology,
> Head of Analysis, Visualisation  and Informatics,
> MRC Weatherall Institute of Molecular Medicine,
> Oxford.
> Tel: +44 (0)1865 (2)22640
>
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