[ome-users] .scn file to tiff file conversions.

[Narapareddy, Mohanapriya]

Hello David,

Thanks for your reply. I am using the following command to convert in . to tiff file.

  bfconvert -bigtiff C3L.01064.21.scn sample1-%s.tif


The problem is when i further try to convert it in to pyramidal tiff i am unable to it as the tiff files are in plane seperate mode. Can you tell me how can i get bioformats to write
an interleaved image and not using plane-separate mode.


Thanks,

Mohanapriya

________________________________
From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk> on behalf of David Gault (Staff) <d.gault at dundee.ac.uk>
Sent: Wednesday, March 6, 2019 6:27:30 AM
To: OME User Support List
Cc: devel OME
Subject: Re: [ome-users] .scn file to tiff file conversions.

Hi Mohanapriya,

How are you converting the files, is it with the command line tools or with FIJI?
Do you have any options selected? Is a pattern string being used for the output name (for example output_series_%s_Z%z_C%c_T%t.tiff
)?

With Thanks,
David Gault

On 5 Mar 2019, at 20:55, Narapareddy, Mohanapriya <mohanapriya.narapareddy at emory.edu<mailto:mohanapriya.narapareddy at emory.edu>> wrote:

Hello i am tring to convert a .scn file to the tiff file. I am able to generate 13 tiff files but i am unable to load them in to the viewer. Can anyone tell me how can i get bioformats to write
an interleaved image and not using plane-separate mode.


Thanks,
Mohanapriya

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