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<p style="margin-top:0;margin-bottom:0">Hello David,</p>
<p style="margin-top:0;margin-bottom:0">Thanks for your reply. I am using the following command to convert in . to tiff file.</p>
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<p style="margin: 0px; font: 12px "Helvetica Neue"; color: rgb(69, 69, 69);"><span class="Apple-converted-space">
</span>bfconvert -bigtiff C3L.01064.21.scn sample1-%s.tif</p>
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The problem is when i further try to convert it in to pyramidal tiff i am unable to it as the tiff files are in plane seperate mode. <span style="font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;">Can you tell me how can i </span><span style="color: rgb(33, 33, 33); font-size: 14.67px; font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif, serif, EmojiFont;">get
bioformats to write</span><br style="font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;">
<span style="color: rgb(33, 33, 33); font-size: 14.67px; font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif, serif, EmojiFont;">an interleaved image and not using<span style="font-size: 14.67px; font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont;"> plane-separate
mode.</span></span>
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<p>Thanks,</p>
<p>Mohanapriya</p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> ome-users <ome-users-bounces@lists.openmicroscopy.org.uk> on behalf of David Gault (Staff) <d.gault@dundee.ac.uk><br>
<b>Sent:</b> Wednesday, March 6, 2019 6:27:30 AM<br>
<b>To:</b> OME User Support List<br>
<b>Cc:</b> devel OME<br>
<b>Subject:</b> Re: [ome-users] .scn file to tiff file conversions.</font>
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<div class="" style="word-wrap:break-word"><span class="" style="font-family:Calibri,Helvetica,sans-serif; font-size:16px">Hi Mohanapriya,</span>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class=""><br class="">
</font></div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class="">How are you converting the files, is it with the command line tools or with FIJI?</font></div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class="">Do you have any options selected? Is a pattern string being used for the output name (for example </font><span class="" style="color:rgb(69,90,100); line-height:15.6px; orphans:2; widows:2; background-color:rgb(236,239,241)">output_series_%s_Z%z_C%c_T%t.tiff</span></div>
<div class="">)?</div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class=""><br class="">
</font></div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class="">With Thanks,</font></div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class="">David Gault</font></div>
<div class=""><font face="Calibri, Helvetica, sans-serif" size="3" class=""><br class="">
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<blockquote type="cite" class="">
<div class="">On 5 Mar 2019, at 20:55, Narapareddy, Mohanapriya <<a href="mailto:mohanapriya.narapareddy@emory.edu" class="">mohanapriya.narapareddy@emory.edu</a>> wrote:</div>
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<div class="" style="margin-top:0px; margin-bottom:0px">Hello i am tring to convert a .scn file to the tiff file. I am able to generate 13 tiff files but i am unable to load them in to the viewer. Can anyone tell me how can i <span class="" style="color:rgb(33,33,33); font-family:wf_segoe-ui_normal,'Segoe UI','Segoe WP',Tahoma,Arial,sans-serif,serif,EmojiFont; font-size:14.6667px">get
bioformats to write</span><br class="" style="color:rgb(33,33,33); font-family:wf_segoe-ui_normal,'Segoe UI','Segoe WP',Tahoma,Arial,sans-serif,serif,EmojiFont; font-size:14.6667px">
<span class="" style="color:rgb(33,33,33); font-family:wf_segoe-ui_normal,'Segoe UI','Segoe WP',Tahoma,Arial,sans-serif,serif,EmojiFont; font-size:14.6667px">an interleaved image and not using<span class="" style="font-family:Calibri,Helvetica,sans-serif,serif,EmojiFont; font-size:14.6667px"> plane-separate
mode.</span></span></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><span class="" style="color:rgb(33,33,33); font-family:wf_segoe-ui_normal,'Segoe UI','Segoe WP',Tahoma,Arial,sans-serif,serif,EmojiFont; font-size:14.6667px"><span class="" style="font-family:Calibri,Helvetica,sans-serif,serif,EmojiFont; font-size:14.6667px"><br class="">
</span></span></div>
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<div class="" style="margin-top:0px; margin-bottom:0px">Thanks,</div>
<div class="" style="margin-top:0px; margin-bottom:0px">Mohanapriya</div>
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