[ome-users] NIFTI image spacing information is ignored

Taylor Braun-Jones taylor at braun-jones.org
Fri May 25 15:36:59 BST 2018


When launching a Fiji with a NIFTI image, the spacing information is
ignored. For example using SimpleITK:

import SimpleITK as sitk
image = sitk.Image(64, 64, sitk.sitkFloat32)
image.SetSpacing((2.0, 3.0))
sitk.Show(image) # Image shown in ImageJ has unity pixel spacing

According to SimpleITK team[1], the bug exists with Fiji. According to the
Fiji team[2], but bug exists with the bio-formats plugin.

[1] https://github.com/SimpleITK/SimpleITK/issues/438
[2] https://github.com/fiji/fiji/issues/191
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