<div dir="ltr">When launching a Fiji with a NIFTI image, the spacing information is ignored. For example using SimpleITK:<div><br></div><div>
<div class="gmail-highlight gmail-highlight-source-python" style="box-sizing:border-box;margin-bottom:16px;background-color:rgb(255,255,255);color:rgb(36,41,46);font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Helvetica,Arial,sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol";font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial;overflow:visible"><pre style="box-sizing:border-box;font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,Courier,monospace;font-size:11.9px;margin-top:0px;margin-bottom:0px;word-wrap:normal;padding:16px;overflow:auto;line-height:1.45;background-color:rgb(246,248,250);border-radius:3px;word-break:normal"><span class="gmail-pl-k" style="box-sizing:border-box;color:rgb(215,58,73)">import</span> SimpleITK <span class="gmail-pl-k" style="box-sizing:border-box;color:rgb(215,58,73)">as</span> sitk
image <span class="gmail-pl-k" style="box-sizing:border-box;color:rgb(215,58,73)">=</span> sitk.Image(<span class="gmail-pl-c1" style="box-sizing:border-box;color:rgb(0,92,197)">64</span>, <span class="gmail-pl-c1" style="box-sizing:border-box;color:rgb(0,92,197)">64</span>, sitk.sitkFloat32)
image.SetSpacing((<span class="gmail-pl-c1" style="box-sizing:border-box;color:rgb(0,92,197)">2.0</span>, <span class="gmail-pl-c1" style="box-sizing:border-box;color:rgb(0,92,197)">3.0</span>))
sitk.Show(image) <span class="gmail-pl-c" style="box-sizing:border-box;color:rgb(106,115,125)"><span class="gmail-pl-c" style="box-sizing:border-box;color:rgb(106,115,125)">#</span> Image shown in ImageJ has unity pixel spacing</span></pre></div><div>According to SimpleITK team[1], the bug exists with Fiji. According to the Fiji team[2], but bug exists with the bio-formats plugin.</div><div><br></div><div>[1] <a href="https://github.com/SimpleITK/SimpleITK/issues/438">https://github.com/SimpleITK/SimpleITK/issues/438</a><br></div></div><div>[2] <a href="https://github.com/fiji/fiji/issues/191">https://github.com/fiji/fiji/issues/191</a></div></div>