[ome-users] Error Title image when opening .nd with bioformat importer

[David Gault (Staff)]

Hi Zhan,

Thank you for your raising this issue, we have had similar reports previously regarding the title displayed on the image window in FIJI.
The image metadata should be correct and remain unaffected, however the title displayed at the top of the window is currently based on the filename of the last file processed.

We have an existing ticket to investigate a better solution for this issue and I have added the details of this report to the ticket.
https://trac.openmicroscopy.org/ome/ticket/13306


With Thanks,
David Gault

On 24 Mar 2017, at 09:49, zhanyinx <yinxiu.zhan at fmi.ch<mailto:yinxiu.zhan at fmi.ch>> wrote:

Dear all,

I am experiencing a problem with the title of images imported with bio format importer in FIJI.
Whatever the .nd file I import, the bioformat importer loads the correct files but assigns the same name to all files.


For example, in a given directory I have the following files:

170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15.nd
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_thumb_w1Penta-FarRed.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_thumb_w2Penta-Red-100.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_thumb_w3Penta-Green.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_thumb_w4Penta-DAPI.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_w1Penta-FarRed.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_w2Penta-Red-100.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_w3Penta-Green.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_15_w4Penta-DAPI.TIF


170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1.nd
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_thumb_w1Penta-FarRed.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_thumb_w2Penta-Red-100.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_thumb_w3Penta-Green.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_thumb_w4Penta-DAPI.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_w1Penta-FarRed.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_w2Penta-Red-100.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_w3Penta-Green.TIF
170313_RNA_TXYDeltaA_DXpas670_Xist610_TsixFITC_1_w4Penta-DAPI.TIF

170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1.nd
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_thumb_w1Penta-FarRed.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_thumb_w2Penta-Red.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_thumb_w3Penta-Green.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_thumb_w4Penta-DAPI.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_w1Penta-FarRed.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_w2Penta-Red.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_w3Penta-Green.TIF
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_w4Penta-DAPI.TIF

and other .nd files with the corresponding TIF files.

Whatever files I open, the name is always
170313_RNA_TXY_DeltaA_Dxpas670_Xist610_Tsix3Fluoresc_1_thumb_w1Penta-FarRed.TIF

System I am using:
Mac OS Sierra
ImageJ 2.0.0-rc-59/1.51k
Java version: "1.6.0_65"
Bio-format importer updated to the last version


Attached you can find an example of .nd file


Thanks for your attention,
Best
Zhan


The University of Dundee is a registered Scottish Charity, No: SC015096
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