[ome-users] OMERO and CellProfilerAnalyst

[Kai Schleicher]

Thanks!!

you guys are awesome :)

Cheers from rainy Basel,
Kai


On 07/27/2017 05:51 PM, Balaji Ramalingam (Staff) wrote:
>
> Hi Kai,
>
> Thank you for the update,
>
> We haven’t tested the integration with CellProfilerAnalyst within the 
> team.
>
> Please give us a day or so, we will test it out locally and give an 
> update on the same.
>
> Hope that works.
>
> Best,
>
> Balaji
>
> *From: *Kai Schleicher <kai.schleicher at unibas.ch>
> *Date: *Thursday, 27 July 2017 at 16:45
> *To: *OME User Support List <ome-users at lists.openmicroscopy.org.uk>, 
> "Balaji Ramalingam (Staff)" <b.ramalingam at dundee.ac.uk>
> *Subject: *Re: [ome-users] OMERO and CellProfilerAnalyst
>
> Hi Balaji,
>
> thanks for your reply and the link to the guide.
>
> Connecting to our OMERO from Cellprofiler works already like a charm 
> (and was without doubt achieved using your guide :)!
>
> What I wanted to do now is to have CellProfiler*Analyst *to also be 
> connected to OMERO.
>
> See the crosspost in the CPA forum 
> <http://forum.cellprofiler.org/t/cellprofileranalyst-and-omero/4962/2> 
> for details.
>
> I was just wondering if anyone had already tried to do the same and 
> had some guidance :)
>
> Thanks and cheers,
> Kai
>
> On 07/27/2017 05:27 PM, Balaji Ramalingam (Staff) wrote:
>
>     Dear Kai,
>
>     To troubleshoot the issue in better detail could you please let us know if you followed all the steps given in the following page,
>
>     https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler
>
>     specifically,
>
>     https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler#omero-server-revisions
>
>     This would have helped you match your OMERO server version to the jars present within cell profiler.
>
>     (It does look like a server-client mismatch issue)
>
>     Thank you,
>
>     Best,
>
>     Balaji
>
>     On 26/07/2017, 16:13, "ome-users on behalf of Kai Schleicher"<ome-users-bounces at lists.openmicroscopy.org.uk on behalf of
>     kai.schleicher at unibas.ch>
>     <mailto:ome-users-bounces at lists.openmicroscopy.org.ukonbehalfofkai.schleicher@unibas.ch>  wrote:
>
>          sorry for the second email but I forgot to mention what the correct URL
>
>          isntead of the one in the screenshot should have been:
>
>          https://omero.biozentrum.unibas.ch/webclient/img_detail/459060/
>
>          On 07/26/2017 05:09 PM, Kai Schleicher wrote:
>
>          > Dear list,
>
>          >
>
>          > We are using the LoadData module in CellProfiler 2.2 to analyse images
>
>          > fetched directly from our OMERO and this is working really well! I am
>
>          > super happy with that :)
>
>          >
>
>          > What I'd like to find out now is if I could use CellProfilerAnalyst
>
>          > 2.2.1 in the next step, have it connect to our OMERO and get the
>
>          > images within CPA as well via "access CellProfiler Analyst images via
>
>          > URL" from the "ExportToDatabase" module in CellProfiler.
>
>          >
>
>          > Basically this gives me a field into which I can enter the URL to my
>
>          > image on the OMERO server, but I have not figured out the correct way
>
>          > to enter the URL , as you can see from the screenshot.
>
>          >
>
>          > I've attached my LoadData module input csv and the CPA properties file
>
>          > for references.
>
>          >
>
>          > Does anyone have experience setting this up?
>
>          >
>
>          > Thanks and cheers,
>
>          > Kai
>
>          >
>
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