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<p>Thanks!!<br>
</p>
<p>you guys are awesome :)</p>
<p>Cheers from rainy Basel,<br>
Kai<br>
</p>
<br>
<div class="moz-cite-prefix">On 07/27/2017 05:51 PM, Balaji
Ramalingam (Staff) wrote:<br>
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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hi
Kai,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Thank
you for the update,
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">We
haven’t tested the integration with CellProfilerAnalyst
within the team.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Please
give us a day or so, we will test it out locally and give an
update on the same.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hope
that works.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Balaji<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF
1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span
style="font-size:12.0pt;color:black">From: </span></b><span
style="font-size:12.0pt;color:black">Kai Schleicher
<a class="moz-txt-link-rfc2396E" href="mailto:kai.schleicher@unibas.ch"><kai.schleicher@unibas.ch></a><br>
<b>Date: </b>Thursday, 27 July 2017 at 16:45<br>
<b>To: </b>OME User Support List
<a class="moz-txt-link-rfc2396E" href="mailto:ome-users@lists.openmicroscopy.org.uk"><ome-users@lists.openmicroscopy.org.uk></a>, "Balaji
Ramalingam (Staff)" <a class="moz-txt-link-rfc2396E" href="mailto:b.ramalingam@dundee.ac.uk"><b.ramalingam@dundee.ac.uk></a><br>
<b>Subject: </b>Re: [ome-users] OMERO and
CellProfilerAnalyst<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<p>Hi Balaji,<o:p></o:p></p>
<p>thanks for your reply and the link to the guide.<o:p></o:p></p>
<p>Connecting to our OMERO from Cellprofiler works already like
a charm (and was without doubt achieved using your guide :)!<br>
<br>
What I wanted to do now is to have CellProfiler<b>Analyst </b>to
also be connected to OMERO.
<o:p></o:p></p>
<p>See the <a
href="http://forum.cellprofiler.org/t/cellprofileranalyst-and-omero/4962/2"
moz-do-not-send="true">
crosspost in the CPA forum</a> for details.<o:p></o:p></p>
<p>I was just wondering if anyone had already tried to do the
same and had some guidance :)<o:p></o:p></p>
<p>Thanks and cheers,<br>
Kai<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On 07/27/2017 05:27 PM, Balaji Ramalingam
(Staff) wrote:<o:p></o:p></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<pre>Dear Kai,<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>To troubleshoot the issue in better detail could you please let us know if you followed all the steps given in the following page,<o:p></o:p></pre>
<pre><a href="https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler" moz-do-not-send="true">https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler</a><o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>specifically,<o:p></o:p></pre>
<pre><a href="https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler#omero-server-revisions" moz-do-not-send="true">https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler#omero-server-revisions</a><o:p></o:p></pre>
<pre>This would have helped you match your OMERO server version to the jars present within cell profiler.<o:p></o:p></pre>
<pre>(It does look like a server-client mismatch issue)<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>Thank you,<o:p></o:p></pre>
<pre>Best,<o:p></o:p></pre>
<pre>Balaji<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>On 26/07/2017, 16:13, "ome-users on behalf of Kai Schleicher" <a href="mailto:ome-users-bounces@lists.openmicroscopy.org.ukonbehalfofkai.schleicher@unibas.ch" moz-do-not-send="true"><ome-users-bounces@lists.openmicroscopy.org.uk on behalf of kai.schleicher@unibas.ch></a> wrote:<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre> sorry for the second email but I forgot to mention what the correct URL<o:p></o:p></pre>
<pre> isntead of the one in the screenshot should have been:<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre> <a href="https://omero.biozentrum.unibas.ch/webclient/img_detail/459060/" moz-do-not-send="true">https://omero.biozentrum.unibas.ch/webclient/img_detail/459060/</a><o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre><o:p> </o:p></pre>
<pre><o:p> </o:p></pre>
<pre> On 07/26/2017 05:09 PM, Kai Schleicher wrote:<o:p></o:p></pre>
<pre> > Dear list,<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > We are using the LoadData module in CellProfiler 2.2 to analyse images<o:p></o:p></pre>
<pre> > fetched directly from our OMERO and this is working really well! I am<o:p></o:p></pre>
<pre> > super happy with that :)<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > What I'd like to find out now is if I could use CellProfilerAnalyst<o:p></o:p></pre>
<pre> > 2.2.1 in the next step, have it connect to our OMERO and get the<o:p></o:p></pre>
<pre> > images within CPA as well via "access CellProfiler Analyst images via<o:p></o:p></pre>
<pre> > URL" from the "ExportToDatabase" module in CellProfiler.<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > Basically this gives me a field into which I can enter the URL to my<o:p></o:p></pre>
<pre> > image on the OMERO server, but I have not figured out the correct way<o:p></o:p></pre>
<pre> > to enter the URL , as you can see from the screenshot.<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > I've attached my LoadData module input csv and the CPA properties file<o:p></o:p></pre>
<pre> > for references.<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > Does anyone have experience setting this up?<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre> > Thanks and cheers,<o:p></o:p></pre>
<pre> > Kai<o:p></o:p></pre>
<pre> ><o:p></o:p></pre>
<pre><o:p> </o:p></pre>
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