[ome-users] OMERO and CellProfilerAnalyst

[Kai Schleicher]

Hi Balaji,

thanks for your reply and the link to the guide.

Connecting to our OMERO from Cellprofiler works already like a charm 
(and was without doubt achieved using your guide :)!

What I wanted to do now is to have CellProfiler*Analyst *to also be 
connected to OMERO.

See the crosspost in the CPA forum 
<http://forum.cellprofiler.org/t/cellprofileranalyst-and-omero/4962/2> 
for details.

I was just wondering if anyone had already tried to do the same and had 
some guidance :)

Thanks and cheers,
Kai


On 07/27/2017 05:27 PM, Balaji Ramalingam (Staff) wrote:
> Dear Kai,
>
> To troubleshoot the issue in better detail could you please let us know if you followed all the steps given in the following page,
> https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler
>
> specifically,
> https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler#omero-server-revisions
> This would have helped you match your OMERO server version to the jars present within cell profiler.
> (It does look like a server-client mismatch issue)
>
> Thank you,
> Best,
> Balaji
>
> On 26/07/2017, 16:13, "ome-users on behalf of Kai Schleicher" <ome-users-bounces at lists.openmicroscopy.org.uk on behalf of kai.schleicher at unibas.ch> wrote:
>
>      sorry for the second email but I forgot to mention what the correct URL
>      isntead of the one in the screenshot should have been:
>
>      https://omero.biozentrum.unibas.ch/webclient/img_detail/459060/
>
>
>
>      On 07/26/2017 05:09 PM, Kai Schleicher wrote:
>      > Dear list,
>      >
>      > We are using the LoadData module in CellProfiler 2.2 to analyse images
>      > fetched directly from our OMERO and this is working really well! I am
>      > super happy with that :)
>      >
>      > What I'd like to find out now is if I could use CellProfilerAnalyst
>      > 2.2.1 in the next step, have it connect to our OMERO and get the
>      > images within CPA as well via "access CellProfiler Analyst images via
>      > URL" from the "ExportToDatabase" module in CellProfiler.
>      >
>      > Basically this gives me a field into which I can enter the URL to my
>      > image on the OMERO server, but I have not figured out the correct way
>      > to enter the URL , as you can see from the screenshot.
>      >
>      > I've attached my LoadData module input csv and the CPA properties file
>      > for references.
>      >
>      > Does anyone have experience setting this up?
>      >
>      > Thanks and cheers,
>      > Kai
>      >
>
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