[ome-users] OMERO and CellProfilerAnalyst

[Balaji Ramalingam (Staff)]

Dear Kai,

To troubleshoot the issue in better detail could you please let us know if you followed all the steps given in the following page,
https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler

specifically,
https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler#omero-server-revisions
This would have helped you match your OMERO server version to the jars present within cell profiler.
(It does look like a server-client mismatch issue)

Thank you,
Best,
Balaji

On 26/07/2017, 16:13, "ome-users on behalf of Kai Schleicher" <ome-users-bounces at lists.openmicroscopy.org.uk on behalf of kai.schleicher at unibas.ch> wrote:

    sorry for the second email but I forgot to mention what the correct URL
    isntead of the one in the screenshot should have been:

    https://omero.biozentrum.unibas.ch/webclient/img_detail/459060/



    On 07/26/2017 05:09 PM, Kai Schleicher wrote:
    > Dear list,
    >
    > We are using the LoadData module in CellProfiler 2.2 to analyse images
    > fetched directly from our OMERO and this is working really well! I am
    > super happy with that :)
    >
    > What I'd like to find out now is if I could use CellProfilerAnalyst
    > 2.2.1 in the next step, have it connect to our OMERO and get the
    > images within CPA as well via "access CellProfiler Analyst images via
    > URL" from the "ExportToDatabase" module in CellProfiler.
    >
    > Basically this gives me a field into which I can enter the URL to my
    > image on the OMERO server, but I have not figured out the correct way
    > to enter the URL , as you can see from the screenshot.
    >
    > I've attached my LoadData module input csv and the CPA properties file
    > for references.
    >
    > Does anyone have experience setting this up?
    >
    > Thanks and cheers,
    > Kai
    >

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