[ome-users] OMERO username and password

Mon Feb 27 16:45:02 GMT 2017

Hello Josh,

1. As attachment, I think the version is 5.2.7

2. I use the "-db" command it still has the same problem. I didn't remember
I set ICE_CONFIG. I only set config following instruction.
"C:\OMERO.server\> bin\omero config set omero.db.name omero_database

C:\OMERO.server\> bin\omero config set omero.db.user db_user
C:\OMERO.server\> bin\omero config set omero.db.pass db_password"

3. This is the Path for System variable (not user variable)
C:\Program Files (x86)\AMD APP\bin\x86_64;C:\Program Files (x86)\AMD
APP\bin\x86;*C:\Program
Files\Java\jdk1.8.0_65\bin;C:\ProgramData\Oracle\Java\javapath;*C:\Program
Files (x86)\NVIDIA
Corporation\PhysX\Common;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program
Files (x86)\Aperio\Common;C:\Program Files (x86)\Point Grey Research\PGR
FlyCapture\bin64\;C:\Program Files\TortoiseSVN\bin;C:\Program Files
(x86)\MiKTeX 2.9\miktex\bin\;C:\Program
Files\MATLAB\R2016a\runtime\win64;C:\Program
Files\MATLAB\R2016a\bin;C:\Program Files
(x86)\MATLAB\R2013a\runtime\win32;C:\Program Files
(x86)\MATLAB\R2013a\bin;C:\Program Files\MATLAB\MATLAB Compiler
Runtime\v715\runtime\win64;C:\Program Files\TortoiseGit\bin;C:\Program
Files (x86)\Git\cmd;C:\Program Files (x86)\ATI
Technologies\ATI.ACE\Core-Static;C:\Program Files\Point Grey
Research\FlyCapture2\bin64;C:\Program Files\MATLAB\MATLAB
Runtime\v901\runtime\win64;C:\Ice-3.5.1-b4-win-x64-Release\bin;C:\Python27

Does this correct? Thank you.

Regards,
Qi

On Mon, Feb 27, 2017 at 11:18 AM, Josh Moore <josh at glencoesoftware.com>
wrote:

> On Mon, Feb 27, 2017 at 4:54 PM, Qi Gong <qigong at gwmail.gwu.edu> wrote:
> > Hello Josh,
>
> Hi Qi,
>
>
> > 1. At first I downloaded and installed the 5.3 version OMERO server, I
> found
> > the problem and reinstall 5.2.7 version. But in the cmd.png attachment
> blue
> > square, there are warning about 5.3 version, do you know how to check the
> > version?
>
> You can use:
>
>    bin\omero version
>
> to see which version you are using. We added the warning in the 5.2
> line to make sure that everyone was aware.
>
>
> >
> > 2. Follow the instruction, I create database in pgAdmin4. As pgAdmin4.png
> > attachment, I set database, login role and password to "testOmero". In
> the
> > cmd.png attachment blue square, what command should I use to initialize
> > database? "bin\omero db script --password testOmero" or  "bin\omero db
> > script --password root_password"?
>
> You want:
>
>   --password testOmero
>
> The documentation uses "root_password" as an example.
>
>
> > 3. In the same square(blue), I face AttributeError? Did you face similar
> > error before?
>
> This error is unexpected. Have you set ICE_CONFIG perhaps? If not,
> could you try running this command with -d1:
>
>   bin\omero -d1 db script --password testOmero
>
>
> > 4. In cmd.png attachment, the red square shows I have java installed.
> But in
> > the green square, It says Java could not be found.
>
> This looks like the environment setting is not propagating to
> subprocesses. Is the Java installation new or have you used it
> previously? In which %PATH% variable is it defined?
>
> Cheers,
> ~Josh.
>
>
> > Thank you very much for your time and help.
> >
> > Regards,
> > Qi
> >
> >
> > On Mon, Feb 27, 2017 at 6:26 AM, Josh Moore <josh at glencoesoftware.com>
> > wrote:
> >>
> >> Hi Qi,
> >>
> >>
> >> On Fri, Feb 24, 2017 at 8:31 PM, Qi Gong <qigong at gwmail.gwu.edu> wrote:
> >> > Hello William,
> >> >
> >> > I tried to install a OMERO server on my local computer follow:
> >> >
> >> > https://www.openmicroscopy.org/site/support/omero5.2/
> sysadmins/windows/server-installation.html
> >>
> >> Just in case you hadn't seen it, Windows support will be ending with
> >> the 5.2 version. OMERO 5.3 which is intended for release next month
> >> has _not_ been tested on Windows. See
> >>
> >> http://blog.openmicroscopy.org/tech-issues/future-plans/
> deployment/2016/03/22/windows-support/
> >> for more information.
> >>
> >> If you'd like to try using Docker or VirtualBox to run a Linux-image
> >> on Windows, please let us know.
> >>
> >>
> >> > But I am facing some problem and have some questions.
> >> > 1. May I skip this command? C:\OMERO.server> bin\omero db script
> >> > --password
> >> > root_password?
> >>
> >> No. This generates the PostgreSQL script which will initialize your
> >> database.
> >>
> >>
> >> > 2. I am sure we have Java installed, but when I enter command:
> >> > bin\omero
> >> > admin start, system says Java could not be found.
> >> >
> >> > I attach a screenshot of cmd window. Have you ever faced similar
> problem
> >> > before? Thank you.
> >>
> >> Is Java set on the system PATH like the variables for Ice & Python
> >> from
> >> https://www.openmicroscopy.org/site/support/omero5.2/
> sysadmins/windows/server-installation.html#environment-variables
> >> ?
> >>
> >> Cheers,
> >> ~Josh
> >>
> >>
> >> > Regards,
> >> > Qi
> >> >
> >> >
> >> > On Wed, Feb 1, 2017 at 6:07 AM, William Moore (Staff)
> >> > <W.Moore at dundee.ac.uk>
> >> > wrote:
> >> >>
> >> >> Hi Qi,
> >> >>
> >> >>  I’m afraid that you do need to install and run an OMERO server.
> >> >>
> >> >> You might want to sign up for an account on our “demo” server that
> will
> >> >> allow you
> >> >> to import some data and get started with OMERO.
> >> >> Although this should not be used as a repository for any important
> >> >> data.
> >> >>
> >> >>  See
> >> >>
> >> >> https://www.openmicroscopy.org/site/support/omero5.2/
> users/demo-server.html
> >> >> for details.
> >> >>
> >> >> Regards,
> >> >>
> >> >>   Will.
> >> >>
> >> >>
> >> >>
> >> >> On 31 Jan 2017, at 20:27, Qi Gong <qigong at gwmail.gwu.edu> wrote:
> >> >>
> >> >> Hello Kenneth,
> >> >>
> >> >> We want to use OMERO to view WSI images on our computer. Do we need
> to
> >> >> install and run a server or is there a stand alone browser? Thank
> you.
> >> >>
> >> >> Regards,
> >> >> Qi
> >> >>
> >> >> On Thu, Jan 26, 2017 at 4:14 PM, Kenneth Gillen (Staff)
> >> >> <k.h.gillen at dundee.ac.uk> wrote:
> >> >>>
> >> >>> Hi Qi,
> >> >>>
> >> >>> Generally you’d be given these by someone at your institution or
> >> >>> organisation. Your local IT support may also be able to suggest
> >> >>> something.
> >> >>>
> >> >>> Perhaps the person who suggested you use OMERO in the first place
> will
> >> >>> be
> >> >>> able to point you in the right direction?
> >> >>>
> >> >>> All the best,
> >> >>>
> >> >>> Kenny
> >> _______________________________________________
> >> ome-users mailing list
> >> ome-users at lists.openmicroscopy.org.uk
> >> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
> >
> >
> >
> >
> > --
> > mobile phone: 2024060862
> >
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> >
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