[ome-users] Orbit Image Analysis v2.41

[Manuel Stritt]

Hi Jason and Damir,

I analyzed your issue and indeed you could only see the users default group.
Today I deployed a fix for that in Orbit version 2.42 which solves this
issue:

- All groups with at least read access are visible.
- To store annotations, you need to have read/annotate or read/write access
to the group the image belongs to.
- Models are stored in the users default group. Thus, other users can only
see someone else’s models if she or he has read access to that group.
(in addition one can store models on file system...)

Thanks a lot for this hint from your side!

You can download the new version here:

http://www.orbit.bio/download/

Regards,
Manuel



Hi Manuel-
>
> Thanks for the updates and all the great work.  It’s great to see this
> going forward.
>
> We have a very cool IPS cell project going on in the lab and was very
> excited to use Orbit to work through some analyses on some of the data
> collected by a few of my colleagues.  I ran into the same problem as Damir—
> I couldn’t access data owned by other members of my group (in an OMERO
> sense).  Speaking selfishly, this is a really important capability— did I
> miss something, or can this be added?
>
> Thanks again for all the great work.
>
> Cheers,
>
> Jason
>
> From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk> on behalf
> of Damir Sudar <dsudar at lbl.gov>
> Reply-To: OME Users <ome-users at lists.openmicroscopy.org.uk>
> Date: Tuesday, 8 November 2016 06:22
> To: OME Users <ome-users at lists.openmicroscopy.org.uk>
> Subject: Re: [ome-users] Orbit Image Analysis v2.41
>
> Hi Manuel,
> Orbit is a very impressive piece of software and it looks like it will be
> very useful for a number of projects at our institute. I look forward to
> spending some time getting familiar with it.
> I noticed a few things I wanted to ask you about:
> 1) i saw that ROI annotations are saved on the OMERO server as small
> attachment files in a format that is not easily parsed. Do you have any
> plans to store those ROIs as OMERO ROIs so they can be handled using the
> other OME tools and associated software? Or is there a way to decode the
> Orbit Annotations so they can be converted to OMERO ROIs (and vice versa)?
> 2) when connecting with an OMERO server, you get the directory of files in
> the user's default group. Is there a way to select a different group for
> those users that are a member of multiple OMERO groups?
> Thanks,
> Damir
>
> Sent from my iPad, please excuse poor spelling
>
> On Nov 7, 2016, at 06:54, Manuel Stritt <manuel.stritt at actelion.com>
> wrote:
>
>
> Hello together,
>
> I just released the new Orbit version which allows you to open and work
> with whole slide images directly from local file system, even without an
> image server.
> (However, the preferred method will always to to connect to an image
> server like Omero.)
>
> This is the outcome of the feedback from many of you who wanted to work
> with local files (e.g. SVS, NDPI, SCN, ...) directly without the need of
> installing an image server first.
>
> This has been made possible by using the Scifio/Bioformats library form
> OME (we use version 5.2.4), so a big thanks goes out to the Bioformats team.
>
> In addition to this some performance improvements have been implemented
> (much faster rendering) and some bugs have been fixed.
> See here <http://www.orbit.bio/2016/11/07/open-local-images/> for more
> details and give it a try!
>
> I also added more tutorials (under documentation).
>
> http://www.orbit.bio/
>
> Kind Regards,
> Manuel
>
>
> --
> Manuel Stritt
> Information Management Drug Discovery
>
>
>
> The information of this email and in any file transmitted with it is
> strictly confidential and may be legally privileged.
> It is intended solely for the addressee. If you are not the intended
> recipient, any copying, distribution or any other use of this email is
> prohibited and may be unlawful. In such case, you should please notify the
> sender immediately and destroy this email.
> The content of this email is not legally binding unless confirmed by
> letter.
> Any views expressed in this message are those of the individual sender,
> except where the message states otherwise and the sender is authorized to
> state them to be the views of the sender's company.
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>


-- 
Manuel Stritt
Information Management Drug Discovery

-- 

The information of this email and in any file transmitted with it is 
strictly confidential and may be legally privileged.
It is intended solely for the addressee. If you are not the intended 
recipient, any copying, distribution or any other use of this email is 
prohibited and may be unlawful. In such case, you should please notify the 
sender immediately and destroy this email.
The content of this email is not legally binding unless confirmed by letter.
Any views expressed in this message are those of the individual sender, 
except where the message states otherwise and the sender is authorized to 
state them to be the views of the sender's company.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20161111/a6d36d64/attachment.html>