[ome-users] nd2 XYZT file that causes an exception

[Balaji Ramalingam (Staff)]

Hi,

Thank you submitting your file.
We were able to reproduce the issue locally.
A ticket has been filed on this regard,
https://trac.openmicroscopy.org/ome/ticket/13179

And you have been added to the cc list.
Notifications will be sent to your email id, when there is a status change
on the ticket.


Hope that helps.
Best,
Balaji

__________________
Mr Balaji Ramalingam
Software Developer

OME Team
College of Life Sciences
University of Dundee






On 17/03/2016 12:32, "Aryeh Weiss" <aryeh at cc.huji.ac.il> wrote:

>Bioformats (from within Fiji) throws an exception when importing an
>XYZT  nd2 file.
>I reported the bug with the FIji bug reporter, and they suggested that I
>post it here.
>Here is the link to the Fiji bugzilla report:
>http://fiji.sc/bugzilla/show_bug.cgi?id=1249
>
>I uploaded the image using this link:
>http://qa.openmicroscopy.org.uk/qa/upload/
>
>I use the Fiji updater to keep my Bioformats up to date.
>
>Here are the first few lines of the exception:
>(Fiji Is Just) ImageJ 2.0.0-rc-46/1.50i3; Java 1.8.0_71 [64-bit]; Mac OS
>X 10.11.3; 37MB of 13933MB (<1%)
>
>java.lang.StringIndexOutOfBoundsException: String index out of range: -6
>     at java.lang.String.substring(String.java:1967)
>     at
>loci.formats.in.NativeND2Reader.parseText(NativeND2Reader.java:2239)
>     at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:748)
>     at loci.formats.FormatReader.setId(FormatReader.java:1426)
>     .
>     .
>     .
>
>Thanks in advance for your assistance.
>--aryeh
>
>--
>Aryeh Weiss
>Faculty of Engineering
>Bar Ilan University
>Ramat Gan 52900 Israel
>
>Ph:  972-3-5317638
>FAX: 972-3-7384051
>
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