[ome-users] nd2 XYZT file that causes an exception

Balaji Ramalingam (Staff) b.ramalingam at dundee.ac.uk
Thu Mar 17 16:41:58 GMT 2016


Thank you submitting your file.
We were able to reproduce the issue locally.
A ticket has been filed on this regard,

And you have been added to the cc list.
Notifications will be sent to your email id, when there is a status change
on the ticket.

Hope that helps.

Mr Balaji Ramalingam
Software Developer

OME Team
College of Life Sciences
University of Dundee

On 17/03/2016 12:32, "Aryeh Weiss" <aryeh at cc.huji.ac.il> wrote:

>Bioformats (from within Fiji) throws an exception when importing an
>XYZT  nd2 file.
>I reported the bug with the FIji bug reporter, and they suggested that I
>post it here.
>Here is the link to the Fiji bugzilla report:
>I uploaded the image using this link:
>I use the Fiji updater to keep my Bioformats up to date.
>Here are the first few lines of the exception:
>(Fiji Is Just) ImageJ 2.0.0-rc-46/1.50i3; Java 1.8.0_71 [64-bit]; Mac OS
>X 10.11.3; 37MB of 13933MB (<1%)
>java.lang.StringIndexOutOfBoundsException: String index out of range: -6
>     at java.lang.String.substring(String.java:1967)
>     at
>     at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:748)
>     at loci.formats.FormatReader.setId(FormatReader.java:1426)
>     .
>     .
>     .
>Thanks in advance for your assistance.
>Aryeh Weiss
>Faculty of Engineering
>Bar Ilan University
>Ramat Gan 52900 Israel
>Ph:  972-3-5317638
>FAX: 972-3-7384051
>ome-users mailing list
>ome-users at lists.openmicroscopy.org.uk

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