[ome-users] nd2 XYZT file that causes an exception
Aryeh Weiss
aryeh at cc.huji.ac.il
Thu Mar 17 12:32:44 GMT 2016
Bioformats (from within Fiji) throws an exception when importing an
XYZT nd2 file.
I reported the bug with the FIji bug reporter, and they suggested that I
post it here.
Here is the link to the Fiji bugzilla report:
http://fiji.sc/bugzilla/show_bug.cgi?id=1249
I uploaded the image using this link:
http://qa.openmicroscopy.org.uk/qa/upload/
I use the Fiji updater to keep my Bioformats up to date.
Here are the first few lines of the exception:
(Fiji Is Just) ImageJ 2.0.0-rc-46/1.50i3; Java 1.8.0_71 [64-bit]; Mac OS
X 10.11.3; 37MB of 13933MB (<1%)
java.lang.StringIndexOutOfBoundsException: String index out of range: -6
at java.lang.String.substring(String.java:1967)
at loci.formats.in.NativeND2Reader.parseText(NativeND2Reader.java:2239)
at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:748)
at loci.formats.FormatReader.setId(FormatReader.java:1426)
.
.
.
Thanks in advance for your assistance.
--aryeh
--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051
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