[ome-users] Bioformats Import Error

[Curtis Rueden]

Hi Rob,

Which update sites do you have enabled? I tested with a Fiji that has only
ImageJ and Fiji update site enabled, and it works.

Please run Help > Update..., click the "Advanced mode" button, and change
the View Options to "View uninstalled files only". This will show whether
any Bio-Formats-related files are missing from your local installation. If
any are missing, you can change their status to "Install" to add them, then
restart Fiji.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Thu, Jul 14, 2016 at 10:53 AM, Tetley, Rob <r.tetley at ucl.ac.uk> wrote:

> I've been getting the following error message when I try and load an image
> series of multiple TIFF files via the Bioformats Importer in FIJI (I have
> checked for updates are there are none). Any help greatly appreciated.
>
>
> Cheers,
>
>
> Rob
>
>
> Reading IFDs
> Populating metadata
> Populating OME metadata
> There was a problem with the class loci.common.DateTools which can be
> found here:
> /D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar
> java.lang.NoSuchMethodError:
> loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
>     at
> loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
>     at
> loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
>     at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
>     at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
>     at loci.formats.FormatReader.setId(FormatReader.java:1395)
>     at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
>     at loci.plugins.in.Importer.showDialogs(Importer.java:140)
>     at loci.plugins.in.Importer.run(Importer.java:76)
>     at loci.plugins.LociImporter.run(LociImporter.java:78)
>     at ij.IJ.runUserPlugIn(IJ.java:216)
>     at ij.IJ.runPlugIn(IJ.java:180)
>     at ij.Executer.runCommand(Executer.java:137)
>     at ij.Executer.run(Executer.java:66)
>     at java.lang.Thread.run(Thread.java:662)
>
> java.lang.NoSuchMethodException: Could not find method
> loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
> There was a problem with the class loci.common.DateTools which can be
> found here:
> /D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar
> java.lang.NoSuchMethodError:
> loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
>     at
> loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
>     at
> loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
>     at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
>     at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
>     at loci.formats.FormatReader.setId(FormatReader.java:1395)
>     at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
>     at loci.plugins.in.Importer.showDialogs(Importer.java:140)
>     at loci.plugins.in.Importer.run(Importer.java:76)
>     at loci.plugins.LociImporter.run(LociImporter.java:78)
>     at ij.IJ.runUserPlugIn(IJ.java:216)
>     at ij.IJ.runPlugIn(IJ.java:180)
>     at ij.Executer.runCommand(Executer.java:137)
>     at ij.Executer.run(Executer.java:66)
>     at java.lang.Thread.run(Thread.java:662)
>
>     at
> loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
>     at
> loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
>     at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
>     at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
>     at loci.formats.FormatReader.setId(FormatReader.java:1395)
>     at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
>     at loci.plugins.in.Importer.showDialogs(Importer.java:140)
>     at loci.plugins.in.Importer.run(Importer.java:76)
>     at loci.plugins.LociImporter.run(LociImporter.java:78)
>     at ij.IJ.runUserPlugIn(IJ.java:216)
>     at ij.IJ.runPlugIn(IJ.java:180)
>     at ij.Executer.runCommand(Executer.java:137)
>     at ij.Executer.run(Executer.java:66)
>     at java.lang.Thread.run(Thread.java:662)
>
>
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