<div dir="ltr">Hi Rob,<div><br></div><div>Which update sites do you have enabled? I tested with a Fiji that has only ImageJ and Fiji update site enabled, and it works.</div><div><br></div><div>Please run Help > Update..., click the "Advanced mode" button, and change the View Options to "View uninstalled files only". This will show whether any Bio-Formats-related files are missing from your local installation. If any are missing, you can change their status to "Install" to add them, then restart Fiji.</div><div><br></div><div>Regards,</div><div>Curtis</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><span style="font-size:12.8px">--</span></div><div><span style="font-size:12.8px">Curtis Rueden</span><br></div><div><span style="font-size:12.8px">LOCI software architect - <a href="http://loci.wisc.edu/software" target="_blank">http://loci.wisc.edu/software</a></span></div><div>ImageJ2 lead, Fiji maintainer - <span style="font-size:12.8px"><a href="http://imagej.net/User:Rueden" target="_blank">http://imagej.net/User:Rueden</a></span></div><div>Did you know ImageJ has a forum? <a href="http://forum.imagej.net/" target="_blank">http://forum.imagej.net/</a></div><div><br></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Jul 14, 2016 at 10:53 AM, Tetley, Rob <span dir="ltr"><<a href="mailto:r.tetley@ucl.ac.uk" target="_blank">r.tetley@ucl.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div style="font-size:12pt;color:#000000;background-color:#ffffff;font-family:Calibri,Arial,Helvetica,sans-serif">
<p>I've been getting the following error message when I try and load an image series of multiple TIFF files via the Bioformats Importer in FIJI (I have checked for updates are there are none). Any help greatly appreciated.</p>
<p><br>
</p>
<p>Cheers,</p>
<p><br>
</p>
<p>Rob<br>
</p>
<p><br>
</p>
<p></p>
<div>Reading IFDs<br>
Populating metadata<br>
Populating OME metadata<br>
There was a problem with the class loci.common.DateTools which can be found here:<br>
/D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar<br>
java.lang.NoSuchMethodError: loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;<br>
at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)<br>
at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)<br>
at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)<br>
at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)<br>
at loci.formats.FormatReader.setId(FormatReader.java:1395)<br>
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)<br>
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)<br>
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br>
at loci.plugins.in.Importer.run(Importer.java:76)<br>
at loci.plugins.LociImporter.run(LociImporter.java:78)<br>
at ij.IJ.runUserPlugIn(IJ.java:216)<br>
at ij.IJ.runPlugIn(IJ.java:180)<br>
at ij.Executer.runCommand(Executer.java:137)<br>
at ij.Executer.run(Executer.java:66)<br>
at java.lang.Thread.run(Thread.java:662)<br>
<br>
java.lang.NoSuchMethodException: Could not find method loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;<br>
There was a problem with the class loci.common.DateTools which can be found here:<br>
/D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar<br>
java.lang.NoSuchMethodError: loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;<br>
at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)<br>
at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)<br>
at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)<br>
at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)<br>
at loci.formats.FormatReader.setId(FormatReader.java:1395)<br>
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)<br>
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)<br>
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br>
at loci.plugins.in.Importer.run(Importer.java:76)<br>
at loci.plugins.LociImporter.run(LociImporter.java:78)<br>
at ij.IJ.runUserPlugIn(IJ.java:216)<br>
at ij.IJ.runPlugIn(IJ.java:180)<br>
at ij.Executer.runCommand(Executer.java:137)<br>
at ij.Executer.run(Executer.java:66)<br>
at java.lang.Thread.run(Thread.java:662)<br>
<br>
at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)<br>
at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)<br>
at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)<br>
at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)<br>
at loci.formats.FormatReader.setId(FormatReader.java:1395)<br>
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)<br>
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)<br>
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br>
at loci.plugins.in.Importer.run(Importer.java:76)<br>
at loci.plugins.LociImporter.run(LociImporter.java:78)<br>
at ij.IJ.runUserPlugIn(IJ.java:216)<br>
at ij.IJ.runPlugIn(IJ.java:180)<br>
at ij.Executer.runCommand(Executer.java:137)<br>
at ij.Executer.run(Executer.java:66)<br>
at java.lang.Thread.run(Thread.java:662)<br>
</div>
<br>
<p></p>
</div>
</div>
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<br></blockquote></div><br></div>