[ome-users] opening .lif file in Fiji

Stephanie Swarbreck ss2062 at cam.ac.uk
Tue Jul 19 16:13:17 BST 2016


Hello, 

I am having trouble opening .lif files using Fiji. The error message I get is pasted below. I have the newest version of Bioformat and Fiji…
Any suggestion? 
Thanks, 
Stephanie
 

(Fiji Is Just) ImageJ 2.0.0-rc-49/1.51d; Java 1.8.0_66 [64-bit]; Mac OS X 10.11.5; 106MB of 9047MB (1%)
 
java.lang.NumberFormatException: Zero length BigInteger
	at java.math.BigInteger.<init>(BigInteger.java:411)
	at loci.formats.FilePatternBlock.explode(FilePatternBlock.java:144)
	at loci.formats.FilePatternBlock.<init>(FilePatternBlock.java:75)
	at loci.formats.FilePattern.<init>(FilePattern.java:163)
	at loci.formats.FilePattern.findSeriesPatterns(FilePattern.java:513)
	at loci.formats.FilePattern.findSeriesPatterns(FilePattern.java:487)
	at loci.formats.FileStitcher.findPatterns(FileStitcher.java:267)
	at loci.formats.FileStitcher.initFile(FileStitcher.java:916)
	at loci.formats.FileStitcher.setId(FileStitcher.java:872)
	at loci.plugins.in.ImportProcess.initializeStack(ImportProcess.java:520)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:147)
	at loci.plugins.in.Importer.showDialogs(Importer.java:140)
	at loci.plugins.in.Importer.run(Importer.java:76)
	at loci.plugins.LociImporter.run(LociImporter.java:78)
	at ij.IJ.runUserPlugIn(IJ.java:216)
	at ij.IJ.runPlugIn(IJ.java:180)
	at ij.IJ.runPlugIn(IJ.java:169)
	at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)
	at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)
	at ij.IJ.runUserPlugIn(IJ.java:216)
	at ij.IJ.runPlugIn(IJ.java:180)
	at ij.IJ.runPlugIn(IJ.java:169)
	at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)
	at ij.io.Opener.openImage(Opener.java:369)
	at ij.io.Opener.openImage(Opener.java:243)
	at ij.io.Opener.open(Opener.java:110)
	at ij.io.Opener.openAndAddToRecent(Opener.java:292)
	at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)
	at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
	at java.lang.Thread.run(Thread.java:745)



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