[ome-users] Problem importing multi-page tif

[Cammer, Michael]

Would you please tell me how to send you sample files to check for:
1.  ND2 files not being opened completely.
2.  CZI files having various issues.
3.  TIFF files exported from Zeiss Blue opening in Photoshop but not with IJ.

Thank you!

=========================================================================
Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical Center
                      Cell:  914-309-3270     ** MY OFFICE HAS MOVED TO SKIRBALL 2nd FLOOR, Back right **
          http://ocs.med.nyu.edu/microscopy & http://microscopynotes.com/

From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Curtis Rueden
Sent: Thursday, September 24, 2015 1:20 PM
To: OME User Support List
Subject: Re: [ome-users] Problem importing multi-page tif

Hi Hermann-Josef,

Thanks for the sample. I added it to our collection for SCIFIO, where we already have an issue filed for this problem:

  https://github.com/scifio/scifio/issues/159

In your case, it's a different bit depths rather than different dimensions, but the problem is the effectively the same.

Sorry to say I don't have a timeline for fixing this, but it's on our radar.

On the Bio-Formats side, I'm not sure whether there is an issue tracking this limitation yet.

Regards,
Curtis

On Thu, Sep 24, 2015 at 10:08 AM, <posts at roeser-reichartshausen.de<mailto:posts at roeser-reichartshausen.de>> wrote:
Hi Curtis,

a sample image is on my server: http://www.roeser-reichartshausen.de/Scans/Test.tif (250 MB)

Thank you for looking into this.

Hermann-Josef


Zitat von Curtis Rueden <ctrueden at wisc.edu<mailto:ctrueden at wisc.edu>>:

Hi Hermann-Josef,

Can you share a sample image?

Regards,
Curtis

On Thu, Sep 24, 2015 at 3:42 AM, <posts at roeser-reichartshausen.de<mailto:posts at roeser-reichartshausen.de>> wrote:

Hello,

my multi-page tif image, created with imagemagick, contains a 3x16bit RGB
image on page 1 and a 1x16bit B&W image on page 2. This image is not
correctly imported with bio-formats 5.1.4 into imageJ. However, it is
correctly opened in GIMP2 and IrfanView. So I suspect, there is a problem
with bio-formats input. However, other images with the same structure but
from a source different to imagemagick are imported correctly.

Does anybody know this problem and a possible solution?

Hermann-Josef

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