<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="Generator" content="Microsoft Word 14 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
@font-face
{font-family:"Adobe Fan Heiti Std B";
panose-1:2 11 7 0 0 0 0 0 0 0;}
@font-face
{font-family:"\@Adobe Fan Heiti Std B";
panose-1:2 11 7 0 0 0 0 0 0 0;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Times New Roman","serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
span.EmailStyle17
{mso-style-type:personal-reply;
font-family:"Calibri","sans-serif";
color:#1F497D;}
.MsoChpDefault
{mso-style-type:export-only;
font-family:"Calibri","sans-serif";}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
</head>
<body lang="EN-US" link="blue" vlink="purple">
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Would you please tell me how to send you sample files to check for:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">1. ND2 files not being opened completely.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">2. CZI files having various issues.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">3. TIFF files exported from Zeiss Blue opening in Photoshop but not with IJ.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thank you!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif";color:#1F497D">=========================================================================<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical Center<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> Cell: 914-309-3270 **
</span><b><span style="font-size:10.0pt;font-family:"Adobe Fan Heiti Std B","sans-serif";color:#1F497D">MY OFFICE HAS MOVED TO SKIRBALL 2<sup>nd</sup> FLOOR, Back right **</span></b><i><span style="font-size:10.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></i></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Calibri","sans-serif";color:#1F497D">
<a href="http://ocs.med.nyu.edu/microscopy">http://ocs.med.nyu.edu/microscopy</a> &
<a href="http://microscopynotes.com/">http://microscopynotes.com/</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> ome-users [mailto:ome-users-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Thursday, September 24, 2015 1:20 PM<br>
<b>To:</b> OME User Support List<br>
<b>Subject:</b> Re: [ome-users] Problem importing multi-page tif<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">Hi Hermann-Josef,<o:p></o:p></p>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Thanks for the sample. I added it to our collection for SCIFIO, where we already have an issue filed for this problem:<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"> <a href="https://github.com/scifio/scifio/issues/159">https://github.com/scifio/scifio/issues/159</a><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">In your case, it's a different bit depths rather than different dimensions, but the problem is the effectively the same.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Sorry to say I don't have a timeline for fixing this, but it's on our radar.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">On the Bio-Formats side, I'm not sure whether there is an issue tracking this limitation yet.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Regards,<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Curtis<o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Thu, Sep 24, 2015 at 10:08 AM, <<a href="mailto:posts@roeser-reichartshausen.de" target="_blank">posts@roeser-reichartshausen.de</a>> wrote:<o:p></o:p></p>
<p class="MsoNormal">Hi Curtis,<br>
<br>
a sample image is on my server: <a href="http://www.roeser-reichartshausen.de/Scans/Test.tif" target="_blank">
http://www.roeser-reichartshausen.de/Scans/Test.tif</a> (250 MB)<br>
<br>
Thank you for looking into this.<br>
<br>
Hermann-Josef<br>
<br>
<br>
Zitat von Curtis Rueden <<a href="mailto:ctrueden@wisc.edu" target="_blank">ctrueden@wisc.edu</a>>:<o:p></o:p></p>
<div>
<div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">Hi Hermann-Josef,<br>
<br>
Can you share a sample image?<br>
<br>
Regards,<br>
Curtis<br>
<br>
On Thu, Sep 24, 2015 at 3:42 AM, <<a href="mailto:posts@roeser-reichartshausen.de" target="_blank">posts@roeser-reichartshausen.de</a>> wrote:<o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
Hello,<br>
<br>
my multi-page tif image, created with imagemagick, contains a 3x16bit RGB<br>
image on page 1 and a 1x16bit B&W image on page 2. This image is not<br>
correctly imported with bio-formats 5.1.4 into imageJ. However, it is<br>
correctly opened in GIMP2 and IrfanView. So I suspect, there is a problem<br>
with bio-formats input. However, other images with the same structure but<br>
from a source different to imagemagick are imported correctly.<br>
<br>
Does anybody know this problem and a possible solution?<br>
<br>
Hermann-Josef<br>
<br>
_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p></o:p></p>
</blockquote>
<p class="MsoNormal"><br>
<br>
<br>
_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p></o:p></p>
</div>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
</div>
<p><br>
------------------------------------------------------------<br>
This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email.<br>
=================================</p></body>
</html>