[ome-users] Wrong metadata for Leica lif files in ImageJ

[Lingfeng Tang]

Dear Balaji,



Thank you so much for testing the bug and creating the ticket! I will
definitely submit my future problems/files to the QA

server.



Have a great day!



Lingfeng

On Fri, Oct 30, 2015 at 6:35 AM, Balaji Ramalingam (Staff) <
b.ramalingam at dundee.ac.uk> wrote:

> Hi,
>
> Thank you for reporting your issue and submitting your file.
> The issue was reproducible with the latest version of Bio-Formats(5.1.5)
> and I have created a ticket for the same,
> https://trac.openmicroscopy.org/ome/ticket/13085#ticket
> And you have been added to the cc list.
>
> You will get notified once there is a status change on the ticket.
>
> For future instances it would be great if you could submit your files to
> our QA server,
> https://www.openmicroscopy.org/qa2/qa/upload/
>
> Best,
> Balaji
>
> __________________
>
> Mr Balaji Ramalingam
>
> Software Developer
>
> OME Team
>
> College of Life Sciences
>
> University of Dundee
>
> From: Lingfeng Tang <lingfengtang1982 at gmail.com>
> Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk>
> Date: Wednesday, 28 October 2015 02:09
> To: "ome-users at lists.openmicroscopy.org.uk" <
> ome-users at lists.openmicroscopy.org.uk>
> Subject: [ome-users] Wrong metadata for Leica lif files in ImageJ
>
> Hi all,
>
>
>
> I have been doing timelapse imaging using Leica SP8 confocal for a while.
> After I got the lif file, I converted it to tiff files. Since the file is
> huge, we don't want to keep the original lif file. However, if I save the
> metadata file created by FiJi or FiJi2, it missed some important
> information, for example, the laser I used were 488 and 561 nm, but it only
> shows 633nm which I didn't use. Did anybody else experienced the same
> problem? Is there any way that can solve this problem?
>
>
>
> Below is the information of my OS (windows 7), version of FIJI and java:
>
>
>   os.arch => amd64
>
>   os.name => Windows 7
>
>   os.version => 6.1
>
>   java.version => 1.6.0_24
>
>   java.vendor => Sun Microsystems Inc.
>
>   java.runtime.name => Java(TM) SE Runtime Environment
>
>   java.runtime.version => 1.6.0_24-b07
>
>   java.vm.name => Java HotSpot(TM) 64-Bit Server VM
>
>   java.vm.version => 19.1-b02
>
>   java.vm.vendor => Sun Microsystems Inc.
>
>   java.vm.info => mixed mode
>
>   java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
>
>   java.specification.name => Java Platform API Specification
>
>   java.specification.version => 1.6
>
>   sun.cpu.endian => little
>
>   sun.desktop => windows
>
>   file.separator => \
>
>
>
> The up-to-date check says: UP_TO_DATE
>
>
>
> I also attached the example lif file with wrong metadata, and the right
> metadata from Leica software.
>
>
> Any ideas, suggestions will be appreciated!
>
>
>
> Sincerely,
>
> Lingfeng Tang
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20151102/24c6092a/attachment.html>