<div dir="ltr"><p style="margin:0in;font-family:Calibri;font-size:11pt">Dear Balaji,</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Thank you so much
for testing the bug and creating the ticket! I will definitely submit my future
problems/files to the QA</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">server. </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Have a great day!</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Lingfeng</p></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Oct 30, 2015 at 6:35 AM, Balaji Ramalingam (Staff) <span dir="ltr"><<a href="mailto:b.ramalingam@dundee.ac.uk" target="_blank">b.ramalingam@dundee.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word;color:rgb(0,0,0);font-size:14px;font-family:Calibri,sans-serif">
<div>
<div>Hi,</div>
<div><br>
</div>
<div>Thank you for reporting your issue and submitting your file.</div>
<div>The issue was reproducible with the latest version of Bio-Formats(5.1.5) and I have created a ticket for the same,</div>
<div><a href="https://trac.openmicroscopy.org/ome/ticket/13085#ticket" target="_blank">https://trac.openmicroscopy.org/ome/ticket/13085#ticket</a></div>
<div>And you have been added to the cc list.</div>
<div><br>
</div>
<div>You will get notified once there is a status change on the ticket. </div>
<div><br>
</div>
<div>For future instances it would be great if you could submit your files to our QA server,</div>
<div><a href="https://www.openmicroscopy.org/qa2/qa/upload/" target="_blank">https://www.openmicroscopy.org/qa2/qa/upload/</a></div>
<div><br>
</div>
<div>Best,</div>
<div>Balaji</div>
<div>
<div><br>
</div>
<div>
<div style="color:rgb(40,40,40)"><span style="background-color:rgb(255,255,255)">__________________</span></div>
<div style="color:rgb(40,40,40)">
<p style="margin-top:0px;margin-bottom:0px">Mr Balaji Ramalingam</p>
<p style="margin-top:0px;margin-bottom:0px">Software Developer<br>
</p>
<p style="margin-top:0px;margin-bottom:0px">OME Team</p>
<p style="margin-top:0px;margin-bottom:0px">College of Life Sciences</p>
<p style="margin-top:0px;margin-bottom:0px">University of Dundee</p>
</div>
</div>
</div>
</div>
<div><br>
</div>
<span>
<div style="font-family:Calibri;font-size:11pt;text-align:left;color:black;BORDER-BOTTOM:medium none;BORDER-LEFT:medium none;PADDING-BOTTOM:0in;PADDING-LEFT:0in;PADDING-RIGHT:0in;BORDER-TOP:#b5c4df 1pt solid;BORDER-RIGHT:medium none;PADDING-TOP:3pt">
<span style="font-weight:bold">From: </span>Lingfeng Tang <<a href="mailto:lingfengtang1982@gmail.com" target="_blank">lingfengtang1982@gmail.com</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, 28 October 2015 02:09<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] Wrong metadata for Leica lif files in ImageJ<br>
</div><div><div class="h5">
<div><br>
</div>
<div>
<div>
<div dir="ltr">
<p style="margin:0in;font-family:Calibri;font-size:11pt">Hi all,</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">I have been doing timelapse imaging using Leica SP8 confocal for a while. After I got the lif file, I converted it to tiff files. Since the file is huge, we don't want to keep the original lif file. However,
if I save the metadata file created by FiJi or FiJi2, it missed some important information, for example, the laser I used were 488 and 561 nm, but it only shows 633nm which I didn't use. Did anybody else experienced the same problem? Is there any way that
can solve this problem? </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Below is the information of my OS (windows 7), version of FIJI and java:</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><span style="font-size:11pt"><br>
</span></p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><span style="font-size:11pt"> </span><span style="font-size:11pt">os.arch => amd64</span><br>
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://os.name" target="_blank">
os.name</a> => Windows 7</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> os.version => 6.1</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.version => 1.6.0_24</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vendor => Sun Microsystems Inc.</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.runtime.name" target="_blank">
java.runtime.name</a> => Java(TM) SE Runtime Environment</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.runtime.version => 1.6.0_24-b07</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.vm.name" target="_blank">
java.vm.name</a> => Java HotSpot(TM) 64-Bit Server VM</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vm.version => 19.1-b02</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vm.vendor => Sun Microsystems Inc.</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.vm.info" target="_blank">
java.vm.info</a> => mixed mode</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.specification.name" target="_blank">
java.specification.name</a> => Java Platform API Specification</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.specification.version => 1.6</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> sun.cpu.endian => little</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> sun.desktop => windows</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> file.separator => \</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">The up-to-date check says: UP_TO_DATE</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">I also attached the example lif file with wrong metadata, and the right metadata from Leica software.
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><br>
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Any ideas, suggestions will be appreciated!</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Sincerely,</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Lingfeng Tang</p>
</div>
</div>
</div>
</div></div></span><br>
<span style="font-size:10pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</div>
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<br></blockquote></div><br></div>