[ome-users] slidebook 6 *.sld metadata

[Melissa Linkert]

Hi Kai,

> Slidebook 6 *.sld files are read nicely by the bioformats (5.1.5) with correct metadata - except for the z-dimension.
> 
> I have recorded a z-stack with 200 nm spacing, but the Voxel depth is reported to be 1 um.
> 
> I also saw that the individual position in a z-stack show up correct in the metadata, i.e. spaced by 200 nm.

Thank you for the feedback.  We're testing a fix for this problem now:

https://github.com/openmicroscopy/bioformats/pull/2063

and I would expect the fix to be included in the upcoming 5.1.6 release.

Regards,
-Melissa

On Thu, Oct 29, 2015 at 01:17:23PM +0000, Kai Schleicher wrote:
> Hi,
> 
> Slidebook 6 *.sld files are read nicely by the bioformats (5.1.5) with correct metadata - except for the z-dimension.
> 
> I have recorded a z-stack with 200 nm spacing, but the Voxel depth is reported to be 1 um.
> 
> I also saw that the individual position in a z-stack show up correct in the metadata, i.e. spaced by 200 nm.
> 
> It would be super if this could be fixed.
> 
> Thanks and Cheers,
> Kai

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