[ome-users] problem opening TIFF

[Sebastien Besson (Staff)]

Hi Adam,

thanks for the bug report and the sample file upload.
We have opened a Pull Request with a proposed fix which is currently
under review - https://github.com/openmicroscopy/bioformats/pull/1811.
Once this changeset is merged into the mainline, you should be to update
Fiji using the Bio-Formats update site to benefit from the bug fix.

Best regards,
Sebastien

On 20 May 2015, at 23:26, Adam Webb <Adam.Webb at lightsource.ca<mailto:Adam.Webb at lightsource.ca>> wrote:

Hi,

I have begun having troubles opening some 16-bit uncompressed files. These files used to be possible to load.
I get the following trace:

(Fiji Is Just) ImageJ 2.0.0-rc-30/1.49s; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 31MB of 24000MB (<1%)
java.lang.NullPointerException
                at loci.formats.in.SimplePCITiffReader.initStandardMetadata(SimplePCITiffReader.java:163)
                at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:98)
                at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
                at loci.formats.FormatReader.setId(FormatReader.java:1396)
                at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
                at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
                at loci.plugins.in.Importer.showDialogs(Importer.java:137)
                at loci.plugins.in.Importer.run(Importer.java:75)
                at loci.plugins.LociImporter.run(LociImporter.java:78)
                at ij.IJ.runUserPlugIn(IJ.java:199)
                at ij.IJ.runPlugIn(IJ.java:163)
                at ij.Executer.runCommand(Executer.java:131)
                at ij.Executer.run(Executer.java:64)
                at java.lang.Thread.run(Thread.java:662)


I ran the updater and Fiji says that it is up to date. Bio-formats reports that it is version 5.1.1-DEV. The images were created using a Hamamatsu camera and HCImage software.

I have uploaded ba_image.tif to the QA system.
Cheers,
Adam Webb
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