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Hi Adam,
<div class=""><br class="">
</div>
<div class="">thanks for the bug report and the sample file upload.</div>
<div class="">We have opened a Pull Request with a proposed fix which is currently</div>
<div class="">under review - <a href="https://github.com/openmicroscopy/bioformats/pull/1811" class="">https://github.com/openmicroscopy/bioformats/pull/1811</a>.</div>
<div class="">Once this changeset is merged into the mainline, you should be to update</div>
<div class="">Fiji using the Bio-Formats update site to benefit from the bug fix.</div>
<div class=""><br class="">
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<div class="">Best regards,</div>
<div class="">Sebastien</div>
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<div class="">On 20 May 2015, at 23:26, Adam Webb <<a href="mailto:Adam.Webb@lightsource.ca" class="">Adam.Webb@lightsource.ca</a>> wrote:</div>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#222222;background:white;mso-fareast-language:EN-CA" class="">Hi,<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#222222;background:white;mso-fareast-language:EN-CA" class=""><o:p class=""> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#222222;background:white;mso-fareast-language:EN-CA" class="">I have begun having troubles opening some 16-bit uncompressed files. These files used to be possible to load.
</span><span style="font-size:12.0pt;font-family:"Times New Roman",serif;mso-fareast-language:EN-CA" class=""><o:p class=""></o:p></span></p>
<p class="MsoNormal" style="background:white;vertical-align:baseline"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#222222;mso-fareast-language:EN-CA" class="">I get the following trace:<o:p class=""></o:p></span></p>
<p class="MsoNormal" style="background:white;vertical-align:baseline"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#222222;mso-fareast-language:EN-CA" class=""> </span></p>
<p class="MsoNormal">(Fiji Is Just) ImageJ 2.0.0-rc-30/1.49s; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 31MB of 24000MB (<1%)<o:p class=""></o:p></p>
<p class="MsoNormal"><o:p class=""></o:p></p>
<p class="MsoNormal">java.lang.NullPointerException<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.formats.in.SimplePCITiffReader.initStandardMetadata(SimplePCITiffReader.java:163)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:98)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.formats.FormatReader.setId(FormatReader.java:1396)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.showDialogs(Importer.java:137)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.run(Importer.java:75)<o:p class=""></o:p></p>
<p class="MsoNormal"> at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></p>
<p class="MsoNormal"> at ij.IJ.runUserPlugIn(IJ.java:199)<o:p class=""></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:163)<o:p class=""></o:p></p>
<p class="MsoNormal"> at ij.Executer.runCommand(Executer.java:131)<o:p class=""></o:p></p>
<p class="MsoNormal"> at ij.Executer.run(Executer.java:64)<o:p class=""></o:p></p>
<p class="MsoNormal"> at java.lang.Thread.run(Thread.java:662)<o:p class=""></o:p></p>
<p class="MsoNormal"><o:p class=""> </o:p></p>
<p class="MsoNormal"><o:p class=""> </o:p></p>
<p class="MsoNormal">I ran the updater and Fiji says that it is up to date. Bio-formats reports that it is version 5.1.1-DEV. The images were created using a Hamamatsu camera and HCImage software.<o:p class=""></o:p></p>
<p class="MsoNormal"><o:p class=""> </o:p></p>
<p class="MsoNormal">I have uploaded ba_image.tif to the QA system.<o:p class=""></o:p></p>
<p class="MsoNormal">Cheers,<br class="">
Adam Webb<o:p class=""></o:p></p>
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