[ome-users] problem opening TIFF

Adam Webb Adam.Webb at lightsource.ca
Wed May 20 23:26:57 BST 2015


Hi,

I have begun having troubles opening some 16-bit uncompressed files. These files used to be possible to load.
I get the following trace:

(Fiji Is Just) ImageJ 2.0.0-rc-30/1.49s; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 31MB of 24000MB (<1%)
java.lang.NullPointerException
                at loci.formats.in.SimplePCITiffReader.initStandardMetadata(SimplePCITiffReader.java:163)
                at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:98)
                at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
                at loci.formats.FormatReader.setId(FormatReader.java:1396)
                at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
                at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
                at loci.plugins.in.Importer.showDialogs(Importer.java:137)
                at loci.plugins.in.Importer.run(Importer.java:75)
                at loci.plugins.LociImporter.run(LociImporter.java:78)
                at ij.IJ.runUserPlugIn(IJ.java:199)
                at ij.IJ.runPlugIn(IJ.java:163)
                at ij.Executer.runCommand(Executer.java:131)
                at ij.Executer.run(Executer.java:64)
                at java.lang.Thread.run(Thread.java:662)


I ran the updater and Fiji says that it is up to date. Bio-formats reports that it is version 5.1.1-DEV. The images were created using a Hamamatsu camera and HCImage software.

I have uploaded ba_image.tif to the QA system.
Cheers,
Adam Webb
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