[ome-users] Bugreport - BioFormats CZIReader gets Dimension Order of CZI wrong

[Sebastian Rhode]

Hi guys,

I think you can ignore my last mail on the dimension order problem for now,
since this was misconception on my side ...

Sebi

2015-03-11 10:43 GMT+01:00 Sebastian Rhode <sebrhode at gmail.com>:

> Hi,
>
> here you can find 2 CZI sample data sets:
>
>
> https://dl.dropboxusercontent.com/u/623476/XYCZT_CH%3D2_Z%3D5_All_CH_per_Slice.czi
>
>
> https://dl.dropboxusercontent.com/u/623476/XYZCT_Z%3D5_CH%3D2_Z%3D5_FullStack_per_CH.czi
>
> The 1st CZI file was acquired with the option "All Channels per Slice" -->
> XYCZT
>
> The 2nd  CZI file was acquired with the option "Full Stack per Channel"
> --> XYZCT
>
> *When I open both files via BioFormats the original Metadata show:*
>
> *"All Channel per Slice" --> DimensenOrder = XYCZT -- > OK*
> *"Full Stack per Channel" --> DimensionOrder = XYCZT --> NOK*
>
> The DimensionOrder seems to be always XYCZT, no matter what it actaully
> was.
>
> Inside the CZI File the "officail" dimension order is:
>
> "All Channel per Slice" --> *BTCZYX0* --> corresponds to XYZCT
> "Full Stack per Channel" --> *BTCZYX0* --> corresponds to XYZCT
>
> Would be nice to get this fixed soon ...
>
> Cheers
>
> Sebi
>
>
>
>
>
>


-- 
Dr. Sebastian Rhode
Grünwalder Straße 103a
81547 München
Tel: +49 89 4703091
Mobil: +49 151 40767993
sebrhode at gmail.com
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