[ome-users] splitting a multi-image series

Petr Walczysko (Staff) p.walczysko at dundee.ac.uk
Fri Jun 5 12:27:57 BST 2015


Hi Damir

Thank you very much for your feedback.
You are right, the Move action will not help you in the workflow you are describing, OMERO always forces you to Move the whole component into the different group,
so I would not go this way anymore.

The best workflow I have for hiding parts of mulit-image series is to

  - create a new dataset  (e.g. named "dump")
  - use in Web or Insight the Cut and Paste (right-click context menu) on the images with labels to remove them from the vicinity of the other, valuable (or unlabelled) multi-image series
  - Paste the images into the "dump" dataset

I realise now that this might not be sufficient enough for your user, because probably a full covering/removal of the labelled images is asked for (in my workflow above, the labelled images will
STILL be visible and accessible when you expand and browse the "dump" folder ) but I am not aware of any better workflow at the moment, possibly one of my colleagues might come up with
some better answer yet.

All the best

Petr

Petr Walczysko
OME Team


On 5 Jun 2015, at 10:35, Damir Sudar <dsudar at lbl.gov<mailto:dsudar at lbl.gov>> wrote:

Hi OME team,

Thanks for an extremely useful and fun User's Meeting this week.

During one of the sessions I had asked whether there was any way to remove one of the components of a multi-image series (one of my users is uploading Aperio .svs images and would like to remove the image of the label because of concerns of it having identifiable patient info on it). Anyway, in your answer it was very clear that actually removing is impossible since all components are in the same image file in the repo so I completely understand that. However, I think it was Josh who suggested that it may be possible to make one of the components not visible and I thought I had remembered that one could do so by moving that component to a different group. I just tried and OMERO tells me very clearly that all components must stay together in the same group. Was there some other way to make one component of a multi-image series not visible?

I already suggested to the user that he could simply obscure the label before scanning but alas, they have scanned ~1000 slides already .....

Thanks,
- Damir

--
Damir Sudar - Staff Scientist
Lawrence Berkeley Laboratory / Life Sciences Division
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: 510/486-5346 - F: 510/486-5586 - E: DSudar at lbl.gov<mailto:DSudar at lbl.gov>

Visiting Scientist, Oregon Health and Science University
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