[ome-users] splitting a multi-image series

[Damir Sudar]

Thanks Petr. I've forwarded your suggestion to my user and let him decide
whether that approach is adequate for him or not. I agree that covering the
label-part of the slide before scanning is the most appropriate thing to do.
- Damir

On Fri, Jun 5, 2015 at 1:27 PM, Petr Walczysko (Staff) <
p.walczysko at dundee.ac.uk> wrote:

>  Hi Damir
>
>  Thank you very much for your feedback.
> You are right, the Move action will not help you in the workflow you are
> describing, OMERO always forces you to Move the whole component into the
> different group,
> so I would not go this way anymore.
>
>  The best workflow I have for hiding parts of mulit-image series is to
>
>    - create a new dataset  (e.g. named "dump")
>   - use in Web or Insight the Cut and Paste (right-click context menu) on
> the images with labels to remove them from the vicinity of the other,
> valuable (or unlabelled) multi-image series
>   - Paste the images into the "dump" dataset
>
>  I realise now that this might not be sufficient enough for your user,
> because probably a full covering/removal of the labelled images is asked
> for (in my workflow above, the labelled images will
> STILL be visible and accessible when you expand and browse the "dump"
> folder ) but I am not aware of any better workflow at the moment, possibly
> one of my colleagues might come up with
> some better answer yet.
>
>  All the best
>
>  Petr
>
>  Petr Walczysko
> OME Team
>
>
>  On 5 Jun 2015, at 10:35, Damir Sudar <dsudar at lbl.gov> wrote:
>
>  Hi OME team,
>
>  Thanks for an extremely useful and fun User's Meeting this week.
>
>  During one of the sessions I had asked whether there was any way to
> remove one of the components of a multi-image series (one of my users is
> uploading Aperio .svs images and would like to remove the image of the
> label because of concerns of it having identifiable patient info on it).
> Anyway, in your answer it was very clear that actually removing is
> impossible since all components are in the same image file in the repo so I
> completely understand that. However, I think it was Josh who suggested that
> it may be possible to make one of the components not visible and I thought
> I had remembered that one could do so by moving that component to a
> different group. I just tried and OMERO tells me very clearly that all
> components must stay together in the same group. Was there some other way
> to make one component of a multi-image series not visible?
>
>  I already suggested to the user that he could simply obscure the label
> before scanning but alas, they have scanned ~1000 slides already .....
>
>  Thanks,
> - Damir
>
>  --
>   Damir Sudar - Staff Scientist
> Lawrence Berkeley Laboratory / Life Sciences Division
> One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
> T: 510/486-5346 - F: 510/486-5586 - E: DSudar at lbl.gov
>
>  Visiting Scientist, Oregon Health and Science University
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-- 
Damir Sudar - Staff Scientist
Lawrence Berkeley Laboratory / Life Sciences Division
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: 510/486-5346 - F: 510/486-5586 - E: DSudar at lbl.gov

Visiting Scientist, Oregon Health and Science University
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