[ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5
Simon Li
spli at dundee.ac.uk
Tue Aug 4 18:03:28 BST 2015
Hi Jean-Marc
What operating system are you using (including the full version)? The ice poackage might have a different name.
Can you run the following two commands in a console and paste the output?
icegridnode --version
python -c 'import Ice; print Ice.stringVersion()'
Thanks, Simon
On 4 August 2015 at 17:38, Jean-Marc Champagne <jean-marc.champagne at mhi-rc.org<mailto:jean-marc.champagne at mhi-rc.org>> wrote:
I re-installed it using Omero.server-5.1.2-ice34-b45 file downloaded from the Omero web site
[cid:image001.png at 01D0CEA8.2F9C3BA0]
And here’s the error msg I get
[cid:image002.png at 01D0CEA8.2F9C3BA0]
[cid:image004.png at 01D0CEAA.2CEBD6C0]
I verified if Ice was installed to find out it was not using
dpkg -s zeroc-ice34
dpkg-query: package 'zeroc-ice34' is not installed and no information is available
Use dpkg --info (= dpkg-deb --info) to examine archive files,
and dpkg --contents (= dpkg-deb --contents) to list their contents.
I went to the community and Maria had the same problem which she use to fix the probleme… what is the long line she is refering to ?
[cid:image003.png at 01D0CEB2.6EFE3B40]
JMarc
From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>] On Behalf Of Sebastien Besson (Staff)
Sent: 1 août 2015 08:15
To: users OME
Subject: Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5
Hi Jean-Marc,
as we already suggested in the previous thread [1] [2], if you have Ice 3.4
installed via your package manager, could you try downloading the Ice 3.4
server and retry to start the server?
The upgrade of your version of Ice depends on your Linux distribution. More
information is available on the Ice 3.5 downloads page [3].
Best,
Sebastien
[1] http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005508.html
[2] http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005509.html
[3] https://zeroc.com/download_3_5_1.html
On 31 Jul 2015, at 15:18, Jean-Marc Champagne <jean-marc.champagne at mhi-rc.org<mailto:jean-marc.champagne at mhi-rc.org>> wrote:
I ran http://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#omero-web-configuration procedures, and had to upgrade postgres from 9.1 to 9.4 to be able to set it up.
psql -h localhost -U db_omero_usr omero_database < sql/psql/OMERO5.1__1/OMERO5.0__0.sql -p 5433
UPDATE 1
status
---------------------------------------------------------------------
+
+
+
YOU HAVE SUCCESSFULLY UPGRADED YOUR DATABASE TO VERSION OMERO5.1__1+
+
+
(1 row)
COMMIT
Reindex was fine and so was the vacuum analyse
But when started omero, I received this error
How do I upgrade ICE ?
Any help would be greatly appreciated…
postgres at sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$<mailto:postgres at sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$> bin/omero admin start
Traceback (most recent call last):
File "bin/omero", line 97, in <module>
import omero.cli
File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python/omero/__init__.py", line 43, in <module>
raise Exception(msg)
Exception:
ERROR: Ice version mismatch!
Your OMERO code has been compiled using Ice version 3.5.1
but you seem to have Ice version 3.4.2 installed. If you need
help understanding this issue, please send this error message
to the OME community:
http://www.openmicroscopy.org/site/community
Debugging Info:
--------------
VERSION=5.1.2-ice35-b45
PYTHONPATH=/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/var/lib:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/bin:/usr/lib/pymodules/python2.7:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45:/usr/lib/python2.7:/usr/lib/python2.7/plat-linux2:/usr/lib/python2.7/lib-tk:/usr/lib/python2.7/lib-old:/usr/lib/python2.7/lib-dynload:/usr/local/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages/PIL:/usr/lib/python2.7/dist-packages/gtk-2.0:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/fallback
JMarc
_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
The University of Dundee is a registered Scottish Charity, No: SC015096
The University of Dundee is a registered Scottish Charity, No: SC015096
_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
The University of Dundee is a registered Scottish Charity, No: SC015096
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150804/d2d3e8c3/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image002.png
Type: image/png
Size: 41714 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150804/d2d3e8c3/attachment.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image003.png
Type: image/png
Size: 42540 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150804/d2d3e8c3/attachment-0001.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.png
Type: image/png
Size: 29782 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150804/d2d3e8c3/attachment-0002.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image004.png
Type: image/png
Size: 45637 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150804/d2d3e8c3/attachment-0003.png>
More information about the ome-users
mailing list