[ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5

Tue Aug 4 17:38:15 BST 2015

I re-installed it using Omero.server-5.1.2-ice34-b45 file downloaded from the Omero web site
[cid:image001.png at 01D0CEA8.2F9C3BA0]

And here’s the error msg I get
[cid:image002.png at 01D0CEA8.2F9C3BA0]

[cid:image004.png at 01D0CEAA.2CEBD6C0]

I verified if Ice was installed to find out it was not using
dpkg -s zeroc-ice34
dpkg-query: package 'zeroc-ice34' is not installed and no information is available
Use dpkg --info (= dpkg-deb --info) to examine archive files,
and dpkg --contents (= dpkg-deb --contents) to list their contents.

I went to the community and Maria had the same problem which she use to fix the probleme… what is the long line she is refering to ?

[cid:image003.png at 01D0CEB2.6EFE3B40]
JMarc

From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Sebastien Besson (Staff)
Sent: 1 août 2015 08:15
To: users OME
Subject: Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5

Hi Jean-Marc,

as we already suggested in the previous thread [1] [2], if you have Ice 3.4
installed via your package manager, could you try downloading the Ice 3.4
server and retry to start the server?
The upgrade of your version of Ice depends on your Linux distribution. More
information is available on the Ice 3.5 downloads page [3].

Best,
Sebastien

[1] http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005508.html
[2] http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005509.html
[3] https://zeroc.com/download_3_5_1.html

On 31 Jul 2015, at 15:18, Jean-Marc Champagne <jean-marc.champagne at mhi-rc.org<mailto:jean-marc.champagne at mhi-rc.org>> wrote:

I ran http://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#omero-web-configuration procedures, and had to upgrade postgres from 9.1 to 9.4 to be able to set it up.

psql -h localhost -U db_omero_usr omero_database < sql/psql/OMERO5.1__1/OMERO5.0__0.sql -p 5433

UPDATE 1
                               status
---------------------------------------------------------------------
                                                                    +
                                                                    +
                                                                    +
YOU HAVE SUCCESSFULLY UPGRADED YOUR DATABASE TO VERSION OMERO5.1__1+
                                                                    +
                                                                    +

(1 row)

COMMIT

Reindex was fine and so was the vacuum analyse

But when started omero, I received this error

How do I upgrade ICE ?
Any help would be greatly appreciated…

postgres at sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$<mailto:postgres at sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$> bin/omero admin start
Traceback (most recent call last):
  File "bin/omero", line 97, in <module>
    import omero.cli
  File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python/omero/__init__.py", line 43, in <module>
    raise Exception(msg)
Exception:

        ERROR: Ice version mismatch!

        Your OMERO code has been compiled using Ice version 3.5.1
        but you seem to have Ice version 3.4.2 installed. If you need
        help understanding this issue, please send this error message
        to the OME community:

        http://www.openmicroscopy.org/site/community

        Debugging Info:
        --------------
        VERSION=5.1.2-ice35-b45
        PYTHONPATH=/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/var/lib:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/bin:/usr/lib/pymodules/python2.7:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45:/usr/lib/python2.7:/usr/lib/python2.7/plat-linux2:/usr/lib/python2.7/lib-tk:/usr/lib/python2.7/lib-old:/usr/lib/python2.7/lib-dynload:/usr/local/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages/PIL:/usr/lib/python2.7/dist-packages/gtk-2.0:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/fallback

JMarc
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