[ome-users] OMERO 5.1-m5 observations

Aleksandra Tarkowska (Staff) A.Tarkowska at dundee.ac.uk
Fri Apr 17 07:27:26 BST 2015


Hi Paul,

Could you also give us more details, like: screenshot showing state of your web browser just before clicking delete, how did you select images and it dataset, etc?


Kind regards
Ola

> On 17 Apr 2015, at 07:07, Josh Moore <josh at glencoesoftware.com> wrote:
>
> Hi Paul,
>
>> The steps to reproduce are (from the webclient):
>> - Select dataset (with over 50 individual images)
>> - Right click dataset and press Delete.
>>
>> Observe that the dataset is removed from the DOM, but no spinner is
>> added to the Activity icon indicating activity.
>>
>> The images are JPEG images.
>
> We've failed to reproduce this with 5.1.0. Have you re-tried it with
> the release version (5.1.0)?
>
> Cheers,
> ~Josh.
>
>
>> On Thu, Apr 2, 2015 at 5:09 PM, Paul van Schayck <paul at vanschayck.nl> wrote:
>> Hi Josh,
>>
>>> On Thu, Apr 2, 2015 at 1:38 PM, Josh Moore <josh at glencoesoftware.com> wrote:
>>> Our primary motivation was to reduce the zip of the OMERO.client zip
>>> since the requirement to have a Java6 and Java7+ version had made
>>> the bundle quite large. It's good to know, though, that someone out
>>> there is looking for it. If not having it in the clients bundle is an issue,
>>> please let us know.
>>
>> Makes sense.
>>
>> Regarding the importers usage. We are actually also adding a top link
>> to the webclient with a custom webstart file starting specifically the
>> importer.
>>
>>> Thanks for bringing this to our attention. Unfortunately, getting this into
>>> 5.1.0 wasn't possible, but we'll look into it for 5.1.1. Just to be clear, this
>>> is the delete of a single data with hundreds of individual images? What
>>> file type were they?
>>
>> The steps to reproduce are (from the webclient):
>> - Select dataset (with over 50 individual images)
>> - Right click dataset and press Delete.
>>
>> Observe that the dataset is removed from the DOM, but no spinner is
>> added to the Activity icon indicating activity.
>>
>> The images are JPEG images.
>>
>>>> - The OMERO.server/var directory is made now by default with the
>>>> permissions 700. This bited our apache setup running as www-data. Is
>>>> this documentated, and intended?
>>>
>>> It's certainly intended that the var directory be created with 700 permissions,
>>> but there hasn't been any recent change to that behavior. But looking
>>> at our docs,
>>> it's not as clear as it should be which we'll take care of. The walkthrough[1]
>>> does include a chmod step.
>>
>> Interesting, I hadn't observed this before.
>>
>> Thanks,
>>
>> Paul
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